Hb_000045_140

Information

Type -
Description -
Location Contig45: 110636-112072
Sequence    

Annotation

kegg
ID rcu:RCOM_0592300
description hypothetical protein
nr
ID XP_012087761.1
description PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
swissprot
ID O04203
description Nematode resistance protein-like HSPRO2 OS=Arabidopsis thaliana GN=HSPRO2 PE=1 SV=1
trembl
ID A0A067LC73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 043_J02.ab1: 110563-111270 , 045_D10.ab1: 110563-111316

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_140 0.0 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
2 Hb_181824_010 0.1078336492 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000532_030 0.1154102509 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
4 Hb_000283_100 0.1183825009 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
5 Hb_010126_030 0.123713852 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
6 Hb_001989_060 0.1257478157 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
7 Hb_007120_010 0.1259085753 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
8 Hb_001846_040 0.1259357963 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000284_180 0.1285352694 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
10 Hb_000819_040 0.132252736 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001999_170 0.1329863501 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
12 Hb_000836_160 0.1368690215 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
13 Hb_005568_060 0.1411875577 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
14 Hb_033149_020 0.1430026315 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_004586_130 0.143217366 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006538_030 0.1453942809 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
17 Hb_022137_020 0.1459932299 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
18 Hb_124677_020 0.146079805 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
19 Hb_011287_020 0.1465174163 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000336_060 0.152052126 - - hypothetical protein JCGZ_26632 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_140 Hb_000045_140 Hb_181824_010 Hb_181824_010 Hb_000045_140--Hb_181824_010 Hb_000532_030 Hb_000532_030 Hb_000045_140--Hb_000532_030 Hb_000283_100 Hb_000283_100 Hb_000045_140--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000045_140--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000045_140--Hb_001989_060 Hb_007120_010 Hb_007120_010 Hb_000045_140--Hb_007120_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_006538_030 Hb_006538_030 Hb_000532_030--Hb_006538_030 Hb_000532_030--Hb_000283_100 Hb_000805_150 Hb_000805_150 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_004787_100 Hb_004787_100 Hb_000532_030--Hb_004787_100 Hb_000283_100--Hb_010126_030 Hb_000283_100--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000283_100--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_010126_030--Hb_001989_060 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_001989_060--Hb_004586_130 Hb_001989_060--Hb_000680_180 Hb_000373_250 Hb_000373_250 Hb_007120_010--Hb_000373_250 Hb_000805_040 Hb_000805_040 Hb_007120_010--Hb_000805_040 Hb_007120_010--Hb_001863_270 Hb_002498_250 Hb_002498_250 Hb_007120_010--Hb_002498_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8155 1261.27 528.67 284.989 37.9368 40.3139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.591 41.9775 15.3497 26.8193 27.1166

CAGE analysis