Hb_006538_030

Information

Type -
Description -
Location Contig6538: 15542-16564
Sequence    

Annotation

kegg
ID rcu:RCOM_1308620
description hypothetical protein
nr
ID XP_012082103.1
description PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18342 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52605: 15599-16772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_030 0.0 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
2 Hb_000532_030 0.092879266 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
3 Hb_000345_500 0.131948101 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
4 Hb_000836_160 0.1345944236 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
5 Hb_000086_610 0.1360424459 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
6 Hb_006043_020 0.1387759141 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
7 Hb_004787_100 0.1409363838 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
8 Hb_002053_030 0.1442500646 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_000045_140 0.1453942809 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
10 Hb_001863_270 0.1496519427 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
11 Hb_000220_090 0.1536374477 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
12 Hb_000776_050 0.1561279375 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_002835_260 0.1619299476 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
14 Hb_181824_010 0.1623349498 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_000260_300 0.1627720904 - - calcium binding protein/cast, putative [Ricinus communis]
16 Hb_002876_070 0.1631458774 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
17 Hb_000103_400 0.1652568788 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_005976_040 0.1663630967 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
19 Hb_000805_150 0.1664572727 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
20 Hb_124677_020 0.1684767353 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_006538_030 Hb_006538_030 Hb_000532_030 Hb_000532_030 Hb_006538_030--Hb_000532_030 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000836_160 Hb_000836_160 Hb_006538_030--Hb_000836_160 Hb_000086_610 Hb_000086_610 Hb_006538_030--Hb_000086_610 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020 Hb_004787_100 Hb_004787_100 Hb_006538_030--Hb_004787_100 Hb_000045_140 Hb_000045_140 Hb_000532_030--Hb_000045_140 Hb_000283_100 Hb_000283_100 Hb_000532_030--Hb_000283_100 Hb_000805_150 Hb_000805_150 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_000532_030--Hb_004787_100 Hb_002053_030 Hb_002053_030 Hb_000345_500--Hb_002053_030 Hb_000776_050 Hb_000776_050 Hb_000345_500--Hb_000776_050 Hb_000345_500--Hb_006043_020 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_000345_500--Hb_001863_270 Hb_032920_040 Hb_032920_040 Hb_000836_160--Hb_032920_040 Hb_000836_160--Hb_000045_140 Hb_005976_040 Hb_005976_040 Hb_000836_160--Hb_005976_040 Hb_000836_160--Hb_000532_030 Hb_082225_010 Hb_082225_010 Hb_000836_160--Hb_082225_010 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_005976_040 Hb_000260_300 Hb_000260_300 Hb_006043_020--Hb_000260_300 Hb_018563_020 Hb_018563_020 Hb_006043_020--Hb_018563_020 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_002217_270 Hb_002217_270 Hb_004787_100--Hb_002217_270 Hb_004324_290 Hb_004324_290 Hb_004787_100--Hb_004324_290 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57667 70.1086 21.6418 16.8911 0.662385 2.00077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68017 5.19217 2.85701 3.37949 0.87335

CAGE analysis