Hb_018563_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig18563: 28527-29330
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07910g
description POPTRDRAFT_553919; hypothetical protein
nr
ID AGL34965.1
description ethylene-responsive transcription factor 6 [Hevea brasiliensis]
swissprot
ID O80337
description Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2
trembl
ID R4N573
description Ethylene-responsive transcription factor 6 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18192: 28394-29444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018563_020 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
2 Hb_005976_040 0.1236268772 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
3 Hb_006043_020 0.1347900198 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
4 Hb_000260_300 0.1414249948 - - calcium binding protein/cast, putative [Ricinus communis]
5 Hb_000086_610 0.1725713952 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
6 Hb_000836_160 0.1769462519 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
7 Hb_006538_030 0.1826291551 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
8 Hb_005496_070 0.1867107036 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
9 Hb_000345_500 0.1917715774 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
10 Hb_002053_030 0.1932039951 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_003023_080 0.1939411778 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_000532_030 0.1947115441 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
13 Hb_001268_060 0.1960199134 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000853_100 0.2113977832 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
15 Hb_158926_010 0.2141772641 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_124677_020 0.2144685344 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_000776_050 0.217065291 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_004079_040 0.2173765965 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
19 Hb_031108_010 0.2180102895 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
20 Hb_082225_010 0.2184835682 - - DWNN domain isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_018563_020 Hb_018563_020 Hb_005976_040 Hb_005976_040 Hb_018563_020--Hb_005976_040 Hb_006043_020 Hb_006043_020 Hb_018563_020--Hb_006043_020 Hb_000260_300 Hb_000260_300 Hb_018563_020--Hb_000260_300 Hb_000086_610 Hb_000086_610 Hb_018563_020--Hb_000086_610 Hb_000836_160 Hb_000836_160 Hb_018563_020--Hb_000836_160 Hb_006538_030 Hb_006538_030 Hb_018563_020--Hb_006538_030 Hb_005976_040--Hb_006043_020 Hb_002053_030 Hb_002053_030 Hb_005976_040--Hb_002053_030 Hb_005976_040--Hb_000260_300 Hb_005976_040--Hb_000836_160 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_000260_300 Hb_000345_500 Hb_000345_500 Hb_006043_020--Hb_000345_500 Hb_006043_020--Hb_006538_030 Hb_124677_020 Hb_124677_020 Hb_000260_300--Hb_124677_020 Hb_155946_030 Hb_155946_030 Hb_000260_300--Hb_155946_030 Hb_000336_060 Hb_000336_060 Hb_000260_300--Hb_000336_060 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_000086_610--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_032920_040 Hb_032920_040 Hb_000836_160--Hb_032920_040 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_082225_010 Hb_082225_010 Hb_000836_160--Hb_082225_010 Hb_006538_030--Hb_000532_030 Hb_006538_030--Hb_000345_500 Hb_004787_100 Hb_004787_100 Hb_006538_030--Hb_004787_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307093 90.6548 32.7917 31.236 0.164 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14533 15.7618 8.39514 4.52267 0.211743

CAGE analysis