Hb_000086_610

Information

Type -
Description -
Location Contig86: 541957-542364
Sequence    

Annotation

kegg
ID pmum:103336033
description classical arabinogalactan protein 1-like
nr
ID XP_011043100.1
description PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID I3S0H2
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_J07.ab1: 541820-542433 , 005_F09.ab1: 541828-542104 , 013_O03.ab1: 541828-542433 , 014_O11.ab1: 541828-542436 , 033_G17.ab1: 541820-542433 , 040_G05.ab1: 541827-542433 , 045_N20.ab1: 541828-542433 , 049_J11.ab1: 542091-542420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_610 0.0 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
2 Hb_001846_040 0.1297043595 - - cytochrome P450, putative [Ricinus communis]
3 Hb_006538_030 0.1360424459 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
4 Hb_019654_010 0.1377984979 - - multicopper oxidase, putative [Ricinus communis]
5 Hb_000322_120 0.1383469292 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
6 Hb_011287_020 0.1422976118 - - ATP binding protein, putative [Ricinus communis]
7 Hb_009683_050 0.1469796587 - - wall-associated kinase, putative [Ricinus communis]
8 Hb_000532_030 0.1488047588 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
9 Hb_002660_090 0.149352832 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
10 Hb_006043_020 0.1521584251 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
11 Hb_000316_150 0.1552794553 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_006483_050 0.1566363079 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
13 Hb_124677_020 0.1591349454 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_022137_020 0.1600436349 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
15 Hb_000260_300 0.161101247 - - calcium binding protein/cast, putative [Ricinus communis]
16 Hb_000336_060 0.1622794292 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
17 Hb_034642_010 0.1631940607 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
18 Hb_009476_010 0.1647148627 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
19 Hb_000045_140 0.1652521275 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
20 Hb_005568_060 0.1662631524 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_610 Hb_000086_610 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_006538_030 Hb_006538_030 Hb_000086_610--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_001846_040--Hb_011287_020 Hb_001846_040--Hb_019654_010 Hb_005568_060 Hb_005568_060 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_006483_050 Hb_006483_050 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_000532_030 Hb_000532_030 Hb_006538_030--Hb_000532_030 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000836_160 Hb_000836_160 Hb_006538_030--Hb_000836_160 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020 Hb_004787_100 Hb_004787_100 Hb_006538_030--Hb_004787_100 Hb_019654_010--Hb_011287_020 Hb_001477_080 Hb_001477_080 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_002922_010 Hb_002922_010 Hb_019654_010--Hb_002922_010 Hb_005882_020 Hb_005882_020 Hb_000322_120--Hb_005882_020 Hb_002660_090 Hb_002660_090 Hb_000322_120--Hb_002660_090 Hb_002284_020 Hb_002284_020 Hb_000322_120--Hb_002284_020 Hb_000322_120--Hb_001289_030 Hb_002205_260 Hb_002205_260 Hb_000322_120--Hb_002205_260 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_011287_020--Hb_006483_050 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_009683_050--Hb_006538_030 Hb_009683_050--Hb_019654_010 Hb_133845_010 Hb_133845_010 Hb_009683_050--Hb_133845_010 Hb_009683_050--Hb_002660_090 Hb_009683_050--Hb_000322_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8669 2897.83 951.018 517.803 4.20156 4.97407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.6765 125.557 66.9861 151.661 16.0001

CAGE analysis