Hb_019654_010

Information

Type -
Description -
Location Contig19654: 2592-7288
Sequence    

Annotation

kegg
ID rcu:RCOM_1600150
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002510630.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9R8I7
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_1600150 PE=4 SV=1
Gene Ontology
ID GO:0005507
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19693: 2714-7191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_010 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_001846_040 0.0994809648 - - cytochrome P450, putative [Ricinus communis]
3 Hb_011287_020 0.1070900625 - - ATP binding protein, putative [Ricinus communis]
4 Hb_001477_080 0.1151690269 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
5 Hb_003582_020 0.1155127217 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
6 Hb_001289_030 0.1206696823 - - syntaxin, plant, putative [Ricinus communis]
7 Hb_002922_010 0.1226813008 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
8 Hb_025477_020 0.1230946482 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
9 Hb_127400_010 0.1233876738 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_000221_280 0.1254776789 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
11 Hb_009683_010 0.1278915308 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_000529_050 0.1289396884 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_029622_080 0.1304796189 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
14 Hb_000313_190 0.1312999785 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
15 Hb_013607_010 0.133343743 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
16 Hb_000133_060 0.1355777041 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_032260_100 0.1367134733 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
18 Hb_000731_020 0.1374948264 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
19 Hb_000086_610 0.1377984979 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
20 Hb_125201_010 0.1399383024 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]

Gene co-expression network

sample Hb_019654_010 Hb_019654_010 Hb_001846_040 Hb_001846_040 Hb_019654_010--Hb_001846_040 Hb_011287_020 Hb_011287_020 Hb_019654_010--Hb_011287_020 Hb_001477_080 Hb_001477_080 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_002922_010 Hb_002922_010 Hb_019654_010--Hb_002922_010 Hb_001846_040--Hb_011287_020 Hb_005568_060 Hb_005568_060 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_006483_050 Hb_006483_050 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_011287_020--Hb_006483_050 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_000529_050 Hb_000529_050 Hb_001477_080--Hb_000529_050 Hb_004242_160 Hb_004242_160 Hb_001477_080--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001477_080--Hb_000313_190 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020 Hb_003582_020--Hb_001289_030 Hb_025477_020 Hb_025477_020 Hb_003582_020--Hb_025477_020 Hb_003582_020--Hb_002922_010 Hb_003582_020--Hb_035391_010 Hb_136027_010 Hb_136027_010 Hb_003582_020--Hb_136027_010 Hb_001411_150 Hb_001411_150 Hb_003582_020--Hb_001411_150 Hb_009683_010 Hb_009683_010 Hb_001289_030--Hb_009683_010 Hb_001289_030--Hb_001411_150 Hb_009189_010 Hb_009189_010 Hb_001289_030--Hb_009189_010 Hb_001289_030--Hb_025477_020 Hb_007383_050 Hb_007383_050 Hb_001289_030--Hb_007383_050 Hb_002922_010--Hb_025477_020 Hb_010417_120 Hb_010417_120 Hb_002922_010--Hb_010417_120 Hb_041534_010 Hb_041534_010 Hb_002922_010--Hb_041534_010 Hb_125201_010 Hb_125201_010 Hb_002922_010--Hb_125201_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.505106 76.1523 19.9621 22.8534 0.206298 0.167177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.628265 0.840393 0.43824 4.21932 0.523371

CAGE analysis