Hb_006483_050

Information

Type -
Description -
Location Contig6483: 49482-50540
Sequence    

Annotation

kegg
ID rcu:RCOM_1409160
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012079238.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067KAA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12404 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_F01.ab1: 50059-50697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_050 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
2 Hb_158123_010 0.0935660385 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_011287_020 0.0947466286 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000316_150 0.1120820051 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_000016_220 0.1172651024 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
6 Hb_001846_040 0.1182811377 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000322_020 0.1274829535 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
8 Hb_002849_030 0.1301355092 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
9 Hb_005568_060 0.1329779683 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
10 Hb_000210_150 0.1334695866 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_035391_010 0.1337636021 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_000422_050 0.1341656487 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
13 Hb_073870_020 0.1345847504 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
14 Hb_000230_210 0.1358276217 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
15 Hb_005618_020 0.1390901776 - - hypothetical protein RCOM_1342750 [Ricinus communis]
16 Hb_000796_200 0.1415918898 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
17 Hb_009476_010 0.1420030433 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
18 Hb_116349_090 0.1422346972 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
19 Hb_009707_010 0.1432996544 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_002311_490 0.1435170421 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]

Gene co-expression network

sample Hb_006483_050 Hb_006483_050 Hb_158123_010 Hb_158123_010 Hb_006483_050--Hb_158123_010 Hb_011287_020 Hb_011287_020 Hb_006483_050--Hb_011287_020 Hb_000316_150 Hb_000316_150 Hb_006483_050--Hb_000316_150 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_001846_040 Hb_001846_040 Hb_006483_050--Hb_001846_040 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_002311_490 Hb_002311_490 Hb_158123_010--Hb_002311_490 Hb_000210_150 Hb_000210_150 Hb_158123_010--Hb_000210_150 Hb_158123_010--Hb_011287_020 Hb_035391_010 Hb_035391_010 Hb_158123_010--Hb_035391_010 Hb_000465_330 Hb_000465_330 Hb_158123_010--Hb_000465_330 Hb_011287_020--Hb_001846_040 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_004324_290 Hb_004324_290 Hb_000316_150--Hb_004324_290 Hb_000316_150--Hb_000210_150 Hb_000316_150--Hb_158123_010 Hb_005882_020 Hb_005882_020 Hb_000316_150--Hb_005882_020 Hb_000574_120 Hb_000574_120 Hb_000316_150--Hb_000574_120 Hb_000230_210 Hb_000230_210 Hb_000016_220--Hb_000230_210 Hb_022768_010 Hb_022768_010 Hb_000016_220--Hb_022768_010 Hb_005618_020 Hb_005618_020 Hb_000016_220--Hb_005618_020 Hb_002849_030 Hb_002849_030 Hb_000016_220--Hb_002849_030 Hb_031862_150 Hb_031862_150 Hb_000016_220--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000016_220--Hb_048538_010 Hb_001846_040--Hb_019654_010 Hb_005568_060 Hb_005568_060 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_001846_040--Hb_035391_010 Hb_004586_120 Hb_004586_120 Hb_000322_020--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_000322_020--Hb_000422_050 Hb_000322_020--Hb_002849_030 Hb_001257_040 Hb_001257_040 Hb_000322_020--Hb_001257_040 Hb_000347_360 Hb_000347_360 Hb_000322_020--Hb_000347_360 Hb_000529_050 Hb_000529_050 Hb_000322_020--Hb_000529_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32089 360.112 65.4613 48.4762 1.93219 1.12208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81514 5.38389 6.92778 2.07275 6.25336

CAGE analysis