Hb_005882_020

Information

Type -
Description -
Location Contig5882: 31509-39086
Sequence    

Annotation

kegg
ID rcu:RCOM_0495210
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532004.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FKH6
description Cytochrome b561 and DOMON domain-containing protein At5g35735 OS=Arabidopsis thaliana GN=At5g35735 PE=2 SV=1
trembl
ID B9T181
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495210 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 and domon domain-containing protein at5g47530-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50023: 37054-39031 , PASA_asmbl_50024: 38148-38389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005882_020 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_055706_010 0.0904800839 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
3 Hb_000322_120 0.1102525593 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
4 Hb_089140_020 0.1259781391 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000210_150 0.1260729241 - - PREDICTED: protein YLS9-like [Jatropha curcas]
6 Hb_002660_090 0.1271745825 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
7 Hb_000316_150 0.1287212386 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000172_300 0.1388527511 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
9 Hb_001568_060 0.1389617302 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
10 Hb_000522_120 0.1408234269 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
11 Hb_004267_070 0.1434695469 - - latex allene oxide synthase [Hevea brasiliensis]
12 Hb_035391_010 0.1436719111 - - TMV resistance protein N, putative [Ricinus communis]
13 Hb_007433_020 0.1459178542 - - hypothetical protein VITISV_005320 [Vitis vinifera]
14 Hb_002205_260 0.1459378377 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
15 Hb_002284_020 0.1479746056 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
16 Hb_189242_010 0.1513348795 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
17 Hb_141990_050 0.1556273687 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
18 Hb_048653_040 0.1562988437 - - ankyrin repeat family protein [Populus trichocarpa]
19 Hb_001289_030 0.1581623512 - - syntaxin, plant, putative [Ricinus communis]
20 Hb_000039_100 0.1582421484 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]

Gene co-expression network

sample Hb_005882_020 Hb_005882_020 Hb_055706_010 Hb_055706_010 Hb_005882_020--Hb_055706_010 Hb_000322_120 Hb_000322_120 Hb_005882_020--Hb_000322_120 Hb_089140_020 Hb_089140_020 Hb_005882_020--Hb_089140_020 Hb_000210_150 Hb_000210_150 Hb_005882_020--Hb_000210_150 Hb_002660_090 Hb_002660_090 Hb_005882_020--Hb_002660_090 Hb_000316_150 Hb_000316_150 Hb_005882_020--Hb_000316_150 Hb_055706_010--Hb_089140_020 Hb_035391_010 Hb_035391_010 Hb_055706_010--Hb_035391_010 Hb_000522_120 Hb_000522_120 Hb_055706_010--Hb_000522_120 Hb_189242_010 Hb_189242_010 Hb_055706_010--Hb_189242_010 Hb_048653_040 Hb_048653_040 Hb_055706_010--Hb_048653_040 Hb_000322_120--Hb_002660_090 Hb_002284_020 Hb_002284_020 Hb_000322_120--Hb_002284_020 Hb_000086_610 Hb_000086_610 Hb_000322_120--Hb_000086_610 Hb_001289_030 Hb_001289_030 Hb_000322_120--Hb_001289_030 Hb_002205_260 Hb_002205_260 Hb_000322_120--Hb_002205_260 Hb_089140_020--Hb_189242_010 Hb_001168_100 Hb_001168_100 Hb_089140_020--Hb_001168_100 Hb_007383_050 Hb_007383_050 Hb_089140_020--Hb_007383_050 Hb_004267_070 Hb_004267_070 Hb_089140_020--Hb_004267_070 Hb_001411_150 Hb_001411_150 Hb_089140_020--Hb_001411_150 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_000210_150--Hb_004267_070 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000210_150--Hb_000316_150 Hb_002660_090--Hb_001289_030 Hb_002660_090--Hb_035391_010 Hb_002660_090--Hb_025477_020 Hb_002660_090--Hb_002205_260 Hb_117602_010 Hb_117602_010 Hb_002660_090--Hb_117602_010 Hb_004324_290 Hb_004324_290 Hb_000316_150--Hb_004324_290 Hb_006483_050 Hb_006483_050 Hb_000316_150--Hb_006483_050 Hb_000316_150--Hb_158123_010 Hb_000574_120 Hb_000574_120 Hb_000316_150--Hb_000574_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221632 699.162 96.0604 47.494 0.0345872 0.0964415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78414 9.52393 8.24889 50.4511 4.42854

CAGE analysis