Hb_002660_090

Information

Type -
Description -
Location Contig2660: 70044-71420
Sequence    

Annotation

kegg
ID tcc:TCM_022156
description hypothetical protein
nr
ID KDP29111.1
description hypothetical protein JCGZ_16500 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27786: 71132-71473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_090 0.0 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
2 Hb_001289_030 0.1111796381 - - syntaxin, plant, putative [Ricinus communis]
3 Hb_000322_120 0.1190603066 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
4 Hb_035391_010 0.1203888444 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_025477_020 0.1207552625 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
6 Hb_002205_260 0.1217319942 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
7 Hb_117602_010 0.1220369447 - - dimethylaniline monooxygenase, putative [Ricinus communis]
8 Hb_005882_020 0.1271745825 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_003582_020 0.1307149312 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
10 Hb_000210_150 0.1309211295 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_055706_010 0.1335202093 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
12 Hb_005843_080 0.1342069376 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_089140_020 0.1357826231 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_189242_010 0.1386750561 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
15 Hb_004267_070 0.1388986255 - - latex allene oxide synthase [Hevea brasiliensis]
16 Hb_019654_010 0.1402713308 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_000086_600 0.1411787345 - - -
18 Hb_001846_040 0.1451789625 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000133_060 0.1458956584 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_009189_010 0.1478802861 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]

Gene co-expression network

sample Hb_002660_090 Hb_002660_090 Hb_001289_030 Hb_001289_030 Hb_002660_090--Hb_001289_030 Hb_000322_120 Hb_000322_120 Hb_002660_090--Hb_000322_120 Hb_035391_010 Hb_035391_010 Hb_002660_090--Hb_035391_010 Hb_025477_020 Hb_025477_020 Hb_002660_090--Hb_025477_020 Hb_002205_260 Hb_002205_260 Hb_002660_090--Hb_002205_260 Hb_117602_010 Hb_117602_010 Hb_002660_090--Hb_117602_010 Hb_009683_010 Hb_009683_010 Hb_001289_030--Hb_009683_010 Hb_001411_150 Hb_001411_150 Hb_001289_030--Hb_001411_150 Hb_003582_020 Hb_003582_020 Hb_001289_030--Hb_003582_020 Hb_009189_010 Hb_009189_010 Hb_001289_030--Hb_009189_010 Hb_001289_030--Hb_025477_020 Hb_007383_050 Hb_007383_050 Hb_001289_030--Hb_007383_050 Hb_005882_020 Hb_005882_020 Hb_000322_120--Hb_005882_020 Hb_002284_020 Hb_002284_020 Hb_000322_120--Hb_002284_020 Hb_000086_610 Hb_000086_610 Hb_000322_120--Hb_000086_610 Hb_000322_120--Hb_001289_030 Hb_000322_120--Hb_002205_260 Hb_035391_010--Hb_003582_020 Hb_000210_150 Hb_000210_150 Hb_035391_010--Hb_000210_150 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_035391_010--Hb_002311_490 Hb_002922_010 Hb_002922_010 Hb_025477_020--Hb_002922_010 Hb_025477_020--Hb_000210_150 Hb_025477_020--Hb_003582_020 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_001477_080 Hb_001477_080 Hb_025477_020--Hb_001477_080 Hb_007407_010 Hb_007407_010 Hb_002205_260--Hb_007407_010 Hb_000133_060 Hb_000133_060 Hb_002205_260--Hb_000133_060 Hb_012545_080 Hb_012545_080 Hb_002205_260--Hb_012545_080 Hb_002205_260--Hb_001289_030 Hb_089140_020 Hb_089140_020 Hb_002205_260--Hb_089140_020 Hb_000086_600 Hb_000086_600 Hb_117602_010--Hb_000086_600 Hb_001565_050 Hb_001565_050 Hb_117602_010--Hb_001565_050 Hb_005843_080 Hb_005843_080 Hb_117602_010--Hb_005843_080 Hb_189242_010 Hb_189242_010 Hb_117602_010--Hb_189242_010 Hb_034132_010 Hb_034132_010 Hb_117602_010--Hb_034132_010 Hb_142691_010 Hb_142691_010 Hb_117602_010--Hb_142691_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 78.7344 14.8013 10.7395 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09786 0.615968 0.20444 3.62059 0

CAGE analysis