Hb_012545_080

Information

Type -
Description -
Location Contig12545: 58291-59403
Sequence    

Annotation

kegg
ID rcu:RCOM_1591870
description hypothetical protein
nr
ID XP_012071703.1
description PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04319 PE=4 SV=1
Gene Ontology
ID GO:0010033
description mrna for ar781 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07817: 58247-59586 , PASA_asmbl_07818: 58247-59684
cDNA
(Sanger)
(ID:Location)		 034_D15.ab1: 58258-59055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012545_080 0.0 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
2 Hb_000996_200 0.0726093373 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
3 Hb_005357_270 0.0839646487 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
4 Hb_000110_330 0.0932759379 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
5 Hb_009683_010 0.1057904702 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_007407_010 0.1090348721 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
7 Hb_012404_050 0.1105593701 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
8 Hb_000133_060 0.111575161 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_002205_260 0.1160778659 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
10 Hb_174380_010 0.1190677334 - - kinase, putative [Ricinus communis]
11 Hb_006634_080 0.126516613 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
12 Hb_007433_020 0.1304156631 - - hypothetical protein VITISV_005320 [Vitis vinifera]
13 Hb_157980_010 0.1309222872 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_004785_120 0.1355599433 - - Receptor protein kinase 1 [Theobroma cacao]
15 Hb_002471_190 0.1363900552 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
16 Hb_008667_030 0.1391471417 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_001289_030 0.1402003859 - - syntaxin, plant, putative [Ricinus communis]
18 Hb_006698_020 0.1402879153 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
19 Hb_117127_010 0.1428576356 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
20 Hb_133845_010 0.144839641 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012545_080 Hb_012545_080 Hb_000996_200 Hb_000996_200 Hb_012545_080--Hb_000996_200 Hb_005357_270 Hb_005357_270 Hb_012545_080--Hb_005357_270 Hb_000110_330 Hb_000110_330 Hb_012545_080--Hb_000110_330 Hb_009683_010 Hb_009683_010 Hb_012545_080--Hb_009683_010 Hb_007407_010 Hb_007407_010 Hb_012545_080--Hb_007407_010 Hb_012404_050 Hb_012404_050 Hb_012545_080--Hb_012404_050 Hb_000996_200--Hb_005357_270 Hb_006634_080 Hb_006634_080 Hb_000996_200--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_000996_200--Hb_157980_010 Hb_004459_110 Hb_004459_110 Hb_000996_200--Hb_004459_110 Hb_004785_120 Hb_004785_120 Hb_000996_200--Hb_004785_120 Hb_005357_270--Hb_000110_330 Hb_005357_270--Hb_006634_080 Hb_009083_010 Hb_009083_010 Hb_005357_270--Hb_009083_010 Hb_174380_010 Hb_174380_010 Hb_005357_270--Hb_174380_010 Hb_000110_330--Hb_012404_050 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_000110_330--Hb_007407_010 Hb_000133_060 Hb_000133_060 Hb_000110_330--Hb_000133_060 Hb_001289_030 Hb_001289_030 Hb_009683_010--Hb_001289_030 Hb_009683_010--Hb_007407_010 Hb_001568_120 Hb_001568_120 Hb_009683_010--Hb_001568_120 Hb_003582_020 Hb_003582_020 Hb_009683_010--Hb_003582_020 Hb_001411_150 Hb_001411_150 Hb_009683_010--Hb_001411_150 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_002205_260 Hb_002205_260 Hb_007407_010--Hb_002205_260 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_012404_050--Hb_007407_010 Hb_012404_050--Hb_004785_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 51.8547 17.6664 8.69712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0349427 0 9.42033 0.863956

CAGE analysis