Hb_041145_010

Information

Type -
Description -
Location Contig41145: 594-1154
Sequence    

Annotation

kegg
ID rcu:RCOM_0352650
description nitrate transporter, putative
nr
ID KDO69969.1
description hypothetical protein CISIN_1g021653mg [Citrus sinensis]
swissprot
ID Q9SX20
description Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1
trembl
ID A0A067FRF1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021653mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041145_010 0.0 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
2 Hb_000110_330 0.090401896 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
3 Hb_117127_010 0.1013935337 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
4 Hb_001568_120 0.1200577452 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
5 Hb_133845_010 0.1268238784 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_003602_090 0.1293308407 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
7 Hb_127400_010 0.1313642465 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_009510_050 0.1314656525 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001628_030 0.1324640352 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
10 Hb_000110_030 0.133298287 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_007407_010 0.1338156991 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
12 Hb_010573_040 0.1355146906 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
13 Hb_022206_030 0.1360164255 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_012404_050 0.1393201987 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
15 Hb_006634_080 0.14106004 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
16 Hb_002049_030 0.1420273699 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
17 Hb_005357_270 0.142423213 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
18 Hb_082870_010 0.1434549654 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_000991_110 0.143973485 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
20 Hb_006615_180 0.144552063 - - hypothetical protein B456_003G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_041145_010 Hb_041145_010 Hb_000110_330 Hb_000110_330 Hb_041145_010--Hb_000110_330 Hb_117127_010 Hb_117127_010 Hb_041145_010--Hb_117127_010 Hb_001568_120 Hb_001568_120 Hb_041145_010--Hb_001568_120 Hb_133845_010 Hb_133845_010 Hb_041145_010--Hb_133845_010 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_127400_010 Hb_127400_010 Hb_041145_010--Hb_127400_010 Hb_012404_050 Hb_012404_050 Hb_000110_330--Hb_012404_050 Hb_012545_080 Hb_012545_080 Hb_000110_330--Hb_012545_080 Hb_007407_010 Hb_007407_010 Hb_000110_330--Hb_007407_010 Hb_005357_270 Hb_005357_270 Hb_000110_330--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_000110_330--Hb_000133_060 Hb_000098_250 Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_008667_030 Hb_008667_030 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_002529_080 Hb_002529_080 Hb_117127_010--Hb_002529_080 Hb_006615_180 Hb_006615_180 Hb_117127_010--Hb_006615_180 Hb_000000_070 Hb_000000_070 Hb_117127_010--Hb_000000_070 Hb_001568_120--Hb_000000_070 Hb_001568_120--Hb_117127_010 Hb_006698_020 Hb_006698_020 Hb_001568_120--Hb_006698_020 Hb_029866_050 Hb_029866_050 Hb_001568_120--Hb_029866_050 Hb_009683_010 Hb_009683_010 Hb_001568_120--Hb_009683_010 Hb_018043_010 Hb_018043_010 Hb_133845_010--Hb_018043_010 Hb_133845_010--Hb_000110_330 Hb_133845_010--Hb_007407_010 Hb_133845_010--Hb_012404_050 Hb_133845_010--Hb_000133_060 Hb_009510_050 Hb_009510_050 Hb_003602_090--Hb_009510_050 Hb_003602_090--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_003602_090--Hb_000723_060 Hb_082870_010 Hb_082870_010 Hb_003602_090--Hb_082870_010 Hb_003602_090--Hb_117127_010 Hb_019040_010 Hb_019040_010 Hb_003602_090--Hb_019040_010 Hb_013607_010 Hb_013607_010 Hb_127400_010--Hb_013607_010 Hb_019654_010 Hb_019654_010 Hb_127400_010--Hb_019654_010 Hb_127400_010--Hb_001568_120 Hb_127400_010--Hb_000133_060 Hb_133508_010 Hb_133508_010 Hb_127400_010--Hb_133508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19204 47.4534 18.2639 21.0103 0.186934 0.128655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.5178 0.840266

CAGE analysis