Hb_000110_330

Information

Type -
Description -
Location Contig110: 344373-358388
Sequence    

Annotation

kegg
ID gmx:100809610
description probable nitrite transporter At1g68570-like
nr
ID XP_006573238.1
description PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
swissprot
ID Q9SX20
description Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1
trembl
ID A0A0B2SRQ7
description Putative nitrite transporter OS=Glycine soja GN=glysoja_044515 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03080: 344378-346926 , PASA_asmbl_03081: 346930-348505 , PASA_asmbl_03082: 344404-348409 , PASA_asmbl_03083: 359230-359538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_330 0.0 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
2 Hb_012404_050 0.0827116933 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
3 Hb_041145_010 0.090401896 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
4 Hb_012545_080 0.0932759379 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
5 Hb_007407_010 0.0998569704 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
6 Hb_005357_270 0.1075062291 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
7 Hb_000133_060 0.110665821 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_133845_010 0.1138250346 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_006634_080 0.1173821545 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
10 Hb_000996_200 0.1214399795 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
11 Hb_055147_010 0.1289661167 - - thioredoxin H-type 7 [Hevea brasiliensis]
12 Hb_117127_010 0.133413793 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
13 Hb_009683_010 0.1454109025 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_018043_010 0.147096242 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
15 Hb_174380_010 0.1490842052 - - kinase, putative [Ricinus communis]
16 Hb_009083_010 0.1505953492 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
17 Hb_127400_010 0.1509895536 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_157980_010 0.152517521 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_004785_120 0.1546493789 - - Receptor protein kinase 1 [Theobroma cacao]
20 Hb_008667_030 0.1568660444 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000110_330 Hb_000110_330 Hb_012404_050 Hb_012404_050 Hb_000110_330--Hb_012404_050 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_012545_080 Hb_012545_080 Hb_000110_330--Hb_012545_080 Hb_007407_010 Hb_007407_010 Hb_000110_330--Hb_007407_010 Hb_005357_270 Hb_005357_270 Hb_000110_330--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_000110_330--Hb_000133_060 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_117127_010 Hb_117127_010 Hb_041145_010--Hb_117127_010 Hb_001568_120 Hb_001568_120 Hb_041145_010--Hb_001568_120 Hb_041145_010--Hb_133845_010 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_127400_010 Hb_127400_010 Hb_041145_010--Hb_127400_010 Hb_000996_200 Hb_000996_200 Hb_012545_080--Hb_000996_200 Hb_012545_080--Hb_005357_270 Hb_009683_010 Hb_009683_010 Hb_012545_080--Hb_009683_010 Hb_012545_080--Hb_007407_010 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_002205_260 Hb_002205_260 Hb_007407_010--Hb_002205_260 Hb_007407_010--Hb_009683_010 Hb_005357_270--Hb_000996_200 Hb_006634_080 Hb_006634_080 Hb_005357_270--Hb_006634_080 Hb_009083_010 Hb_009083_010 Hb_005357_270--Hb_009083_010 Hb_174380_010 Hb_174380_010 Hb_005357_270--Hb_174380_010 Hb_000133_060--Hb_002205_260 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_000133_060--Hb_174380_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0247761 18.5923 7.1052 4.90281 0.0632937 0.0685219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.59116 0.0812975

CAGE analysis