Hb_019961_010

Information

Type -
Description -
Location Contig19961: 5084-5572
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11350g
description POPTRDRAFT_577573; hypothetical protein
nr
ID XP_002324034.1
description hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IJS6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19981: 5286-5611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019961_010 0.0 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
2 Hb_012702_010 0.098638637 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
3 Hb_138628_010 0.1111401882 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000133_060 0.1149335098 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_002272_140 0.1158165239 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
6 Hb_007433_020 0.1180161831 - - hypothetical protein VITISV_005320 [Vitis vinifera]
7 Hb_008667_020 0.1295159225 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
8 Hb_000003_420 0.131311101 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_004267_070 0.134980422 - - latex allene oxide synthase [Hevea brasiliensis]
10 Hb_021596_070 0.135997364 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
11 Hb_001411_150 0.1401391152 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
12 Hb_011054_030 0.1419124825 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
13 Hb_174380_010 0.1440686155 - - kinase, putative [Ricinus communis]
14 Hb_000172_300 0.1443875624 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
15 Hb_000347_370 0.1449074215 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
16 Hb_000181_080 0.1477472825 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
17 Hb_111985_060 0.1485880731 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
18 Hb_055706_010 0.1498662356 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
19 Hb_007383_050 0.1520188628 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
20 Hb_035391_010 0.1548190487 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_019961_010 Hb_019961_010 Hb_012702_010 Hb_012702_010 Hb_019961_010--Hb_012702_010 Hb_138628_010 Hb_138628_010 Hb_019961_010--Hb_138628_010 Hb_000133_060 Hb_000133_060 Hb_019961_010--Hb_000133_060 Hb_002272_140 Hb_002272_140 Hb_019961_010--Hb_002272_140 Hb_007433_020 Hb_007433_020 Hb_019961_010--Hb_007433_020 Hb_008667_020 Hb_008667_020 Hb_019961_010--Hb_008667_020 Hb_012702_010--Hb_002272_140 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_138628_010--Hb_002272_140 Hb_181824_010 Hb_181824_010 Hb_138628_010--Hb_181824_010 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_005568_060 Hb_005568_060 Hb_138628_010--Hb_005568_060 Hb_007407_010 Hb_007407_010 Hb_000133_060--Hb_007407_010 Hb_002205_260 Hb_002205_260 Hb_000133_060--Hb_002205_260 Hb_000110_330 Hb_000110_330 Hb_000133_060--Hb_000110_330 Hb_012545_080 Hb_012545_080 Hb_000133_060--Hb_012545_080 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_000103_400 Hb_000103_400 Hb_002272_140--Hb_000103_400 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080 Hb_007433_020--Hb_008667_020 Hb_021596_070 Hb_021596_070 Hb_007433_020--Hb_021596_070 Hb_001411_150 Hb_001411_150 Hb_007433_020--Hb_001411_150 Hb_007433_020--Hb_011054_030 Hb_111985_060 Hb_111985_060 Hb_007433_020--Hb_111985_060 Hb_008667_020--Hb_021596_070 Hb_008667_020--Hb_011054_030 Hb_008667_020--Hb_111985_060 Hb_007371_020 Hb_007371_020 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50195 68.4798 10.186 11.3087 0.411418 0.167891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.417726 0.328156 0 9.75218 0.813842

CAGE analysis