Hb_111985_060

Information

Type -
Description -
Location Contig111985: 36543-40595
Sequence    

Annotation

kegg
ID rcu:RCOM_1595810
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_012071942.1
description PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
swissprot
ID Q67YU0
description Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1
trembl
ID A0A067L395
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04489 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_060 0.0 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
2 Hb_003090_060 0.0511659349 - - PAR1 protein [Theobroma cacao]
3 Hb_005054_300 0.0731662565 - - aquaporin [Hevea brasiliensis]
4 Hb_011054_030 0.0923723003 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
5 Hb_021596_070 0.0950542245 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_002621_030 0.0963599112 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
7 Hb_008667_020 0.0966589313 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
8 Hb_079955_010 0.1065331412 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
9 Hb_000123_310 0.1097401168 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
10 Hb_002219_090 0.1123784288 - - protein kinase atmrk1, putative [Ricinus communis]
11 Hb_004931_050 0.1152705424 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
12 Hb_157980_010 0.1207279696 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_007433_020 0.12594433 - - hypothetical protein VITISV_005320 [Vitis vinifera]
14 Hb_002085_070 0.1297919303 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_149056_010 0.1333472394 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
16 Hb_000338_030 0.1347921674 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
17 Hb_029866_140 0.1349340761 - - PREDICTED: hevamine-A [Jatropha curcas]
18 Hb_011791_010 0.1355306099 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
19 Hb_151281_010 0.1356092189 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
20 Hb_001376_020 0.1377758803 - - hypothetical protein JCGZ_01547 [Jatropha curcas]

Gene co-expression network

sample Hb_111985_060 Hb_111985_060 Hb_003090_060 Hb_003090_060 Hb_111985_060--Hb_003090_060 Hb_005054_300 Hb_005054_300 Hb_111985_060--Hb_005054_300 Hb_011054_030 Hb_011054_030 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_002621_030 Hb_002621_030 Hb_111985_060--Hb_002621_030 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020 Hb_003090_060--Hb_002621_030 Hb_079955_010 Hb_079955_010 Hb_003090_060--Hb_079955_010 Hb_003090_060--Hb_005054_300 Hb_151281_010 Hb_151281_010 Hb_003090_060--Hb_151281_010 Hb_004931_050 Hb_004931_050 Hb_003090_060--Hb_004931_050 Hb_005054_300--Hb_011054_030 Hb_009778_030 Hb_009778_030 Hb_005054_300--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_005054_300--Hb_000123_310 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_000039_100 Hb_000039_100 Hb_011054_030--Hb_000039_100 Hb_011054_030--Hb_021596_070 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_010962_030 Hb_010962_030 Hb_021596_070--Hb_010962_030 Hb_007371_020 Hb_007371_020 Hb_021596_070--Hb_007371_020 Hb_002621_030--Hb_079955_010 Hb_131591_010 Hb_131591_010 Hb_002621_030--Hb_131591_010 Hb_000676_030 Hb_000676_030 Hb_002621_030--Hb_000676_030 Hb_002621_030--Hb_151281_010 Hb_008667_020--Hb_007433_020 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.635 0.62911 0.64706 0.0115449 0.0121678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.35556 0.139083

CAGE analysis