Hb_004931_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4931: 66522-67961
Sequence    

Annotation

kegg
ID rcu:RCOM_1213960
description Transcription repressor MYB4, putative
nr
ID XP_002524614.1
description Transcription repressor MYB4, putative [Ricinus communis]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID B9SF45
description Transcription repressor MYB4, putative OS=Ricinus communis GN=RCOM_1213960 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_050 0.0 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
2 Hb_001486_130 0.1064894388 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_003090_060 0.1067672429 - - PAR1 protein [Theobroma cacao]
4 Hb_111985_060 0.1152705424 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
5 Hb_001749_020 0.1246935075 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
6 Hb_079955_010 0.1286062258 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
7 Hb_001376_020 0.1300434311 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
8 Hb_011054_030 0.1330438952 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
9 Hb_005054_300 0.1355994309 - - aquaporin [Hevea brasiliensis]
10 Hb_025030_010 0.1361359587 - - -
11 Hb_151281_010 0.1383655216 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
12 Hb_002205_260 0.1416622534 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
13 Hb_029866_140 0.1438681025 - - PREDICTED: hevamine-A [Jatropha curcas]
14 Hb_008667_020 0.1518819636 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
15 Hb_002621_030 0.1559186809 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
16 Hb_007433_020 0.1569159514 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_051450_010 0.1597361117 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001691_190 0.1616358712 - - conserved hypothetical protein [Ricinus communis]
19 Hb_089140_020 0.1637327888 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_003636_010 0.1675757598 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_004931_050 Hb_004931_050 Hb_001486_130 Hb_001486_130 Hb_004931_050--Hb_001486_130 Hb_003090_060 Hb_003090_060 Hb_004931_050--Hb_003090_060 Hb_111985_060 Hb_111985_060 Hb_004931_050--Hb_111985_060 Hb_001749_020 Hb_001749_020 Hb_004931_050--Hb_001749_020 Hb_079955_010 Hb_079955_010 Hb_004931_050--Hb_079955_010 Hb_001376_020 Hb_001376_020 Hb_004931_050--Hb_001376_020 Hb_001486_130--Hb_001376_020 Hb_001486_130--Hb_001749_020 Hb_008707_020 Hb_008707_020 Hb_001486_130--Hb_008707_020 Hb_001403_070 Hb_001403_070 Hb_001486_130--Hb_001403_070 Hb_000035_360 Hb_000035_360 Hb_001486_130--Hb_000035_360 Hb_003090_060--Hb_111985_060 Hb_002621_030 Hb_002621_030 Hb_003090_060--Hb_002621_030 Hb_003090_060--Hb_079955_010 Hb_005054_300 Hb_005054_300 Hb_003090_060--Hb_005054_300 Hb_151281_010 Hb_151281_010 Hb_003090_060--Hb_151281_010 Hb_111985_060--Hb_005054_300 Hb_011054_030 Hb_011054_030 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_111985_060--Hb_002621_030 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020 Hb_001749_020--Hb_001376_020 Hb_001749_020--Hb_001403_070 Hb_001749_020--Hb_008707_020 Hb_004656_030 Hb_004656_030 Hb_001749_020--Hb_004656_030 Hb_000656_360 Hb_000656_360 Hb_001749_020--Hb_000656_360 Hb_079955_010--Hb_151281_010 Hb_079955_010--Hb_002621_030 Hb_131591_010 Hb_131591_010 Hb_079955_010--Hb_131591_010 Hb_011791_010 Hb_011791_010 Hb_079955_010--Hb_011791_010 Hb_079955_010--Hb_111985_060 Hb_001376_020--Hb_008707_020 Hb_029866_140 Hb_029866_140 Hb_001376_020--Hb_029866_140 Hb_001376_020--Hb_000035_360 Hb_001376_020--Hb_000656_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.17614 0.484018 0.279853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.831867 0

CAGE analysis