Hb_001376_020

Information

Type -
Description -
Location Contig1376: 13143-16775
Sequence    

Annotation

kegg
ID rcu:RCOM_1077560
description ATP binding protein, putative
nr
ID KDP45047.1
description hypothetical protein JCGZ_01547 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067L9F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01547 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001376_020 0.0 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
2 Hb_008707_020 0.0600941221 - - ATP binding protein, putative [Ricinus communis]
3 Hb_029866_140 0.0641085085 - - PREDICTED: hevamine-A [Jatropha curcas]
4 Hb_001486_130 0.0680829381 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_001749_020 0.080442592 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
6 Hb_000035_360 0.088185532 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
7 Hb_000656_360 0.0961600192 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
8 Hb_011054_030 0.1001015306 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
9 Hb_003847_140 0.1010900202 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_001274_040 0.1106911781 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
11 Hb_005054_300 0.1110722199 - - aquaporin [Hevea brasiliensis]
12 Hb_011924_030 0.1191724778 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001403_070 0.1240319271 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
14 Hb_000233_060 0.1267314646 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
15 Hb_039650_010 0.129186701 - - cellulose synthase-like protein [Populus tomentosa]
16 Hb_004931_050 0.1300434311 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
17 Hb_002025_370 0.1307382025 - - monooxygenase, putative [Ricinus communis]
18 Hb_000111_130 0.130960928 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_000284_060 0.1313349052 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
20 Hb_005081_060 0.1326583442 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001376_020 Hb_001376_020 Hb_008707_020 Hb_008707_020 Hb_001376_020--Hb_008707_020 Hb_029866_140 Hb_029866_140 Hb_001376_020--Hb_029866_140 Hb_001486_130 Hb_001486_130 Hb_001376_020--Hb_001486_130 Hb_001749_020 Hb_001749_020 Hb_001376_020--Hb_001749_020 Hb_000035_360 Hb_000035_360 Hb_001376_020--Hb_000035_360 Hb_000656_360 Hb_000656_360 Hb_001376_020--Hb_000656_360 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_008707_020--Hb_039650_010 Hb_011924_030 Hb_011924_030 Hb_008707_020--Hb_011924_030 Hb_008707_020--Hb_001486_130 Hb_029866_140--Hb_000656_360 Hb_029866_140--Hb_003847_140 Hb_029866_140--Hb_008707_020 Hb_176149_010 Hb_176149_010 Hb_029866_140--Hb_176149_010 Hb_011054_030 Hb_011054_030 Hb_029866_140--Hb_011054_030 Hb_001486_130--Hb_001749_020 Hb_001403_070 Hb_001403_070 Hb_001486_130--Hb_001403_070 Hb_004931_050 Hb_004931_050 Hb_001486_130--Hb_004931_050 Hb_001486_130--Hb_000035_360 Hb_001749_020--Hb_001403_070 Hb_001749_020--Hb_008707_020 Hb_004656_030 Hb_004656_030 Hb_001749_020--Hb_004656_030 Hb_001749_020--Hb_000656_360 Hb_000233_060 Hb_000233_060 Hb_000035_360--Hb_000233_060 Hb_000035_360--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_000035_360--Hb_000284_060 Hb_001331_050 Hb_001331_050 Hb_000035_360--Hb_001331_050 Hb_000656_360--Hb_003847_140 Hb_000656_360--Hb_176149_010 Hb_066262_010 Hb_066262_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.77289 0.132724 0.206021 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.596371 0.0437364

CAGE analysis