Hb_066262_010

Information

Type -
Description -
Location Contig66262: 3399-3875
Sequence    

Annotation

kegg
ID rcu:RCOM_1045160
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID KDP31573.1
description hypothetical protein JCGZ_14798 [Jatropha curcas]
swissprot
ID B9SBV6
description Probable terpene synthase 3 OS=Ricinus communis GN=TPS3 PE=3 SV=1
trembl
ID A0A067K970
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14798 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066262_010 0.0 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
2 Hb_003847_140 0.0733918595 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
3 Hb_000656_360 0.0860992434 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
4 Hb_000879_100 0.0936489195 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_005643_010 0.0939561778 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_000233_060 0.0940299043 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
7 Hb_119441_010 0.0945664636 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
8 Hb_011924_030 0.0991034154 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001331_050 0.100806028 - - hypothetical protein VITISV_022439 [Vitis vinifera]
10 Hb_000369_150 0.1019310146 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
11 Hb_000767_040 0.1036986491 - - cytochrome P450, putative [Ricinus communis]
12 Hb_176149_010 0.1131927349 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
13 Hb_008707_020 0.114275574 - - ATP binding protein, putative [Ricinus communis]
14 Hb_005081_060 0.1144664379 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
15 Hb_000035_360 0.1153454849 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
16 Hb_000284_060 0.1180007409 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
17 Hb_004652_050 0.1195032459 - - hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
18 Hb_004586_380 0.1245410314 - - purine transporter, putative [Ricinus communis]
19 Hb_029866_140 0.1259613208 - - PREDICTED: hevamine-A [Jatropha curcas]
20 Hb_006351_080 0.1261851168 - - hypothetical protein B456_011G275400 [Gossypium raimondii]

Gene co-expression network

sample Hb_066262_010 Hb_066262_010 Hb_003847_140 Hb_003847_140 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000879_100 Hb_000879_100 Hb_066262_010--Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_066262_010--Hb_005643_010 Hb_000233_060 Hb_000233_060 Hb_066262_010--Hb_000233_060 Hb_119441_010 Hb_119441_010 Hb_066262_010--Hb_119441_010 Hb_003847_140--Hb_000656_360 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_011924_030 Hb_011924_030 Hb_003847_140--Hb_011924_030 Hb_029866_140 Hb_029866_140 Hb_003847_140--Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150 Hb_000879_100--Hb_005643_010 Hb_000879_100--Hb_119441_010 Hb_000879_100--Hb_000369_150 Hb_001331_050 Hb_001331_050 Hb_000879_100--Hb_001331_050 Hb_000879_100--Hb_003847_140 Hb_005643_010--Hb_001331_050 Hb_005643_010--Hb_119441_010 Hb_005643_010--Hb_000369_150 Hb_000277_020 Hb_000277_020 Hb_005643_010--Hb_000277_020 Hb_000035_360 Hb_000035_360 Hb_000233_060--Hb_000035_360 Hb_000233_060--Hb_001331_050 Hb_066262_020 Hb_066262_020 Hb_000233_060--Hb_066262_020 Hb_000233_060--Hb_011924_030 Hb_002067_110 Hb_002067_110 Hb_000233_060--Hb_002067_110 Hb_119441_010--Hb_000369_150 Hb_119441_010--Hb_001331_050 Hb_004098_010 Hb_004098_010 Hb_119441_010--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_119441_010--Hb_000128_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701302 86.7357 0.185959 5.28475 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.4111 0.692752

CAGE analysis