Hb_003847_140

Information

Type -
Description -
Location Contig3847: 143040-145195
Sequence    

Annotation

kegg
ID tcc:TCM_016543
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID XP_012086662.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID A0A067JR32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20404 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38731: 142841-145281
cDNA
(Sanger)
(ID:Location)		 034_D11.ab1: 144036-145281

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_140 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
2 Hb_000656_360 0.056841224 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
3 Hb_066262_010 0.0733918595 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
4 Hb_008707_020 0.0807032772 - - ATP binding protein, putative [Ricinus communis]
5 Hb_005081_060 0.0818486925 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
6 Hb_011924_030 0.0843227068 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_029866_140 0.0937566721 - - PREDICTED: hevamine-A [Jatropha curcas]
8 Hb_004656_030 0.0944075293 - - putative pectin methylesterase family protein [Populus trichocarpa]
9 Hb_000879_100 0.0971374564 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_005643_010 0.0996017689 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
11 Hb_000277_020 0.1003173161 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
12 Hb_000035_360 0.1005184163 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
13 Hb_001376_020 0.1010900202 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
14 Hb_119441_010 0.1014916391 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
15 Hb_001749_020 0.1063389217 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
16 Hb_001331_050 0.1071926391 - - hypothetical protein VITISV_022439 [Vitis vinifera]
17 Hb_039650_010 0.1076532754 - - cellulose synthase-like protein [Populus tomentosa]
18 Hb_000284_060 0.1076735014 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
19 Hb_000369_150 0.1085749023 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
20 Hb_001437_200 0.1103452848 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]

Gene co-expression network

sample Hb_003847_140 Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_003847_140--Hb_000656_360 Hb_066262_010 Hb_066262_010 Hb_003847_140--Hb_066262_010 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_011924_030 Hb_011924_030 Hb_003847_140--Hb_011924_030 Hb_029866_140 Hb_029866_140 Hb_003847_140--Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150 Hb_000879_100 Hb_000879_100 Hb_066262_010--Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_066262_010--Hb_005643_010 Hb_000233_060 Hb_000233_060 Hb_066262_010--Hb_000233_060 Hb_066262_010--Hb_119441_010 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_000035_360 Hb_000035_360 Hb_008707_020--Hb_000035_360 Hb_039650_010 Hb_039650_010 Hb_008707_020--Hb_039650_010 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130 Hb_005081_060--Hb_039650_010 Hb_005081_060--Hb_000656_360 Hb_001274_040 Hb_001274_040 Hb_005081_060--Hb_001274_040 Hb_005081_060--Hb_008707_020 Hb_001437_200 Hb_001437_200 Hb_005081_060--Hb_001437_200 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_011924_030--Hb_000035_360 Hb_000284_060 Hb_000284_060 Hb_011924_030--Hb_000284_060 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_029866_140--Hb_001376_020 Hb_029866_140--Hb_008707_020 Hb_029866_140--Hb_176149_010 Hb_011054_030 Hb_011054_030 Hb_029866_140--Hb_011054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0604241 145.598 1.41354 8.50175 0.0721822 0.275156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0425207 0 0 13.5826 1.10503

CAGE analysis