Hb_001486_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig1486: 99734-101731
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05300g
description POPTRDRAFT_571190; hypothetical protein
nr
ID XP_012070432.1
description PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A067KXJ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_02708 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12235: 100065-101246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_130 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
2 Hb_001376_020 0.0680829381 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
3 Hb_001749_020 0.0779990109 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
4 Hb_008707_020 0.0930386336 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001403_070 0.1025408768 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
6 Hb_004931_050 0.1064894388 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
7 Hb_000035_360 0.1137733476 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
8 Hb_029866_140 0.1142501027 - - PREDICTED: hevamine-A [Jatropha curcas]
9 Hb_011054_030 0.1147130458 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
10 Hb_002648_020 0.1262211128 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
11 Hb_005054_300 0.1277958269 - - aquaporin [Hevea brasiliensis]
12 Hb_005588_020 0.1331497198 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
13 Hb_006452_140 0.1337238361 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
14 Hb_048653_040 0.1338951088 - - ankyrin repeat family protein [Populus trichocarpa]
15 Hb_011924_030 0.1377729009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_003847_140 0.1378841353 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
17 Hb_000656_360 0.1410625112 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_000796_100 0.1439170854 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_000070_140 0.1478675686 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_111985_060 0.1479060666 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_130 Hb_001486_130 Hb_001376_020 Hb_001376_020 Hb_001486_130--Hb_001376_020 Hb_001749_020 Hb_001749_020 Hb_001486_130--Hb_001749_020 Hb_008707_020 Hb_008707_020 Hb_001486_130--Hb_008707_020 Hb_001403_070 Hb_001403_070 Hb_001486_130--Hb_001403_070 Hb_004931_050 Hb_004931_050 Hb_001486_130--Hb_004931_050 Hb_000035_360 Hb_000035_360 Hb_001486_130--Hb_000035_360 Hb_001376_020--Hb_008707_020 Hb_029866_140 Hb_029866_140 Hb_001376_020--Hb_029866_140 Hb_001376_020--Hb_001749_020 Hb_001376_020--Hb_000035_360 Hb_000656_360 Hb_000656_360 Hb_001376_020--Hb_000656_360 Hb_001749_020--Hb_001403_070 Hb_001749_020--Hb_008707_020 Hb_004656_030 Hb_004656_030 Hb_001749_020--Hb_004656_030 Hb_001749_020--Hb_000656_360 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_008707_020--Hb_039650_010 Hb_011924_030 Hb_011924_030 Hb_008707_020--Hb_011924_030 Hb_006124_040 Hb_006124_040 Hb_001403_070--Hb_006124_040 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_001403_070--Hb_011924_030 Hb_006452_140 Hb_006452_140 Hb_001403_070--Hb_006452_140 Hb_003090_060 Hb_003090_060 Hb_004931_050--Hb_003090_060 Hb_111985_060 Hb_111985_060 Hb_004931_050--Hb_111985_060 Hb_004931_050--Hb_001749_020 Hb_079955_010 Hb_079955_010 Hb_004931_050--Hb_079955_010 Hb_004931_050--Hb_001376_020 Hb_000233_060 Hb_000233_060 Hb_000035_360--Hb_000233_060 Hb_000035_360--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_000035_360--Hb_000284_060 Hb_001331_050 Hb_001331_050 Hb_000035_360--Hb_001331_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 47.5216 2.69301 1.54574 0.0333117 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0379235 0.0298324 0 7.58091 0.247714

CAGE analysis