Hb_022630_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig22630: 13577-14137
Sequence    

Annotation

kegg
ID rcu:RCOM_0168650
description DNA binding protein, putative
nr
ID XP_002534096.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C9I2
description Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1
trembl
ID B9T777
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0168650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf021-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022630_010 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_078477_010 0.0258760012 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
3 Hb_005648_030 0.063599948 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
4 Hb_004656_030 0.0898901841 - - putative pectin methylesterase family protein [Populus trichocarpa]
5 Hb_027913_010 0.0905604797 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_002193_050 0.0940281647 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
7 Hb_001403_070 0.0971378971 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
8 Hb_001405_260 0.101237516 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
9 Hb_044026_010 0.1047506588 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
10 Hb_000333_150 0.1084874503 - - hypothetical protein RCOM_0711500 [Ricinus communis]
11 Hb_001749_020 0.109946704 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
12 Hb_001190_020 0.1139236494 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005588_010 0.1151651297 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_000959_290 0.1197251098 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
15 Hb_189242_010 0.1217784211 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
16 Hb_033153_010 0.1219488394 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
17 Hb_007850_050 0.1220654762 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
18 Hb_006519_010 0.1231066684 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
19 Hb_004994_070 0.1273631893 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
20 Hb_089140_020 0.1310877565 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_022630_010 Hb_022630_010 Hb_078477_010 Hb_078477_010 Hb_022630_010--Hb_078477_010 Hb_005648_030 Hb_005648_030 Hb_022630_010--Hb_005648_030 Hb_004656_030 Hb_004656_030 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070 Hb_078477_010--Hb_005648_030 Hb_000333_150 Hb_000333_150 Hb_078477_010--Hb_000333_150 Hb_078477_010--Hb_004656_030 Hb_001405_260 Hb_001405_260 Hb_078477_010--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_078477_010--Hb_044026_010 Hb_005648_030--Hb_001405_260 Hb_005648_030--Hb_044026_010 Hb_005588_010 Hb_005588_010 Hb_005648_030--Hb_005588_010 Hb_033153_010 Hb_033153_010 Hb_005648_030--Hb_033153_010 Hb_004656_030--Hb_027913_010 Hb_000656_360 Hb_000656_360 Hb_004656_030--Hb_000656_360 Hb_003847_140 Hb_003847_140 Hb_004656_030--Hb_003847_140 Hb_001749_020 Hb_001749_020 Hb_004656_030--Hb_001749_020 Hb_001190_020 Hb_001190_020 Hb_027913_010--Hb_001190_020 Hb_027913_010--Hb_000656_360 Hb_001437_200 Hb_001437_200 Hb_027913_010--Hb_001437_200 Hb_027913_010--Hb_078477_010 Hb_000473_010 Hb_000473_010 Hb_002193_050--Hb_000473_010 Hb_000699_200 Hb_000699_200 Hb_002193_050--Hb_000699_200 Hb_003683_090 Hb_003683_090 Hb_002193_050--Hb_003683_090 Hb_002193_050--Hb_005648_030 Hb_000890_190 Hb_000890_190 Hb_002193_050--Hb_000890_190 Hb_001403_070--Hb_001749_020 Hb_006124_040 Hb_006124_040 Hb_001403_070--Hb_006124_040 Hb_011924_030 Hb_011924_030 Hb_001403_070--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_001403_070--Hb_001486_130 Hb_006452_140 Hb_006452_140 Hb_001403_070--Hb_006452_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.7371 0.114811 0.0981484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108536 0

CAGE analysis