Hb_006124_040

Information

Type -
Description -
Location Contig6124: 41889-43162
Sequence    

Annotation

kegg
ID rcu:RCOM_1122780
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002525480.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q9SFF9
description Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1
trembl
ID B9SHL1
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1122780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006124_040 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_006452_140 0.0758505385 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
3 Hb_030312_060 0.0802322262 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
4 Hb_002648_020 0.0810435173 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
5 Hb_003683_090 0.0888346778 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_001403_070 0.0919696499 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
7 Hb_000699_200 0.1007192794 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
8 Hb_000484_050 0.1123520358 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
9 Hb_007658_030 0.1128768572 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
10 Hb_011909_130 0.1130679424 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
11 Hb_000890_190 0.1171877878 - - glutaredoxin, grx, putative [Ricinus communis]
12 Hb_001511_130 0.1196267501 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
13 Hb_030593_010 0.1200420031 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
14 Hb_011639_130 0.1228045052 - - mads box protein, putative [Ricinus communis]
15 Hb_034558_010 0.1230030635 - - -
16 Hb_004829_050 0.1233706035 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
17 Hb_001766_090 0.1244119592 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
18 Hb_023827_010 0.1265468947 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
19 Hb_001403_100 0.1267528845 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
20 Hb_001104_260 0.1269594043 - - hypothetical protein JCGZ_23628 [Jatropha curcas]

Gene co-expression network

sample Hb_006124_040 Hb_006124_040 Hb_006452_140 Hb_006452_140 Hb_006124_040--Hb_006452_140 Hb_030312_060 Hb_030312_060 Hb_006124_040--Hb_030312_060 Hb_002648_020 Hb_002648_020 Hb_006124_040--Hb_002648_020 Hb_003683_090 Hb_003683_090 Hb_006124_040--Hb_003683_090 Hb_001403_070 Hb_001403_070 Hb_006124_040--Hb_001403_070 Hb_000699_200 Hb_000699_200 Hb_006124_040--Hb_000699_200 Hb_000796_100 Hb_000796_100 Hb_006452_140--Hb_000796_100 Hb_006452_140--Hb_002648_020 Hb_001271_040 Hb_001271_040 Hb_006452_140--Hb_001271_040 Hb_001403_100 Hb_001403_100 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260 Hb_034558_010 Hb_034558_010 Hb_030312_060--Hb_034558_010 Hb_128894_010 Hb_128894_010 Hb_030312_060--Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_030312_060--Hb_106595_010 Hb_044724_020 Hb_044724_020 Hb_030312_060--Hb_044724_020 Hb_007264_050 Hb_007264_050 Hb_030312_060--Hb_007264_050 Hb_001766_090 Hb_001766_090 Hb_030312_060--Hb_001766_090 Hb_006353_010 Hb_006353_010 Hb_002648_020--Hb_006353_010 Hb_002648_020--Hb_001403_070 Hb_001268_070 Hb_001268_070 Hb_002648_020--Hb_001268_070 Hb_002648_020--Hb_003683_090 Hb_000890_190 Hb_000890_190 Hb_003683_090--Hb_000890_190 Hb_003683_090--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_003683_090--Hb_000473_010 Hb_002193_050 Hb_002193_050 Hb_003683_090--Hb_002193_050 Hb_000510_350 Hb_000510_350 Hb_003683_090--Hb_000510_350 Hb_001749_020 Hb_001749_020 Hb_001403_070--Hb_001749_020 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_011924_030 Hb_011924_030 Hb_001403_070--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_001403_070--Hb_001486_130 Hb_001403_070--Hb_006452_140 Hb_000699_200--Hb_000473_010 Hb_000699_200--Hb_002193_050 Hb_000699_200--Hb_000890_190 Hb_001511_130 Hb_001511_130 Hb_000699_200--Hb_001511_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.75053 0.0768424 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.248973 0

CAGE analysis