Hb_000890_190

Information

Type -
Description -
Location Contig890: 164396-164704
Sequence    

Annotation

kegg
ID rcu:RCOM_0680270
description glutaredoxin, grx, putative
nr
ID XP_002516882.1
description glutaredoxin, grx, putative [Ricinus communis]
swissprot
ID Q9LIF1
description Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana GN=GRXS10 PE=3 SV=1
trembl
ID B9RT13
description Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0680270 PE=4 SV=1
Gene Ontology
ID GO:0005623
description monothiol glutaredoxin-s10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_190 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
2 Hb_003683_090 0.0403861255 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000510_350 0.0626066739 - - Putative polyprotein [Oryza sativa Japonica Group]
4 Hb_000699_200 0.0865290596 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
5 Hb_000473_010 0.0878116635 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
6 Hb_168039_020 0.0949226457 - - -
7 Hb_002193_050 0.1061447789 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
8 Hb_006124_040 0.1171877878 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_002290_100 0.1270984719 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_002648_020 0.1293297293 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
11 Hb_001403_070 0.137400326 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
12 Hb_051450_010 0.1509487917 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012553_010 0.1539628411 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
14 Hb_001486_130 0.1560796716 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
15 Hb_025030_010 0.158586116 - - -
16 Hb_001268_070 0.1590296367 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006452_140 0.1599280833 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
18 Hb_001749_020 0.1679858735 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
19 Hb_001511_130 0.1714775428 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
20 Hb_022630_010 0.1758058221 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000890_190 Hb_000890_190 Hb_003683_090 Hb_003683_090 Hb_000890_190--Hb_003683_090 Hb_000510_350 Hb_000510_350 Hb_000890_190--Hb_000510_350 Hb_000699_200 Hb_000699_200 Hb_000890_190--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_000890_190--Hb_000473_010 Hb_168039_020 Hb_168039_020 Hb_000890_190--Hb_168039_020 Hb_002193_050 Hb_002193_050 Hb_000890_190--Hb_002193_050 Hb_003683_090--Hb_000699_200 Hb_003683_090--Hb_000473_010 Hb_006124_040 Hb_006124_040 Hb_003683_090--Hb_006124_040 Hb_003683_090--Hb_002193_050 Hb_003683_090--Hb_000510_350 Hb_000510_350--Hb_168039_020 Hb_012553_010 Hb_012553_010 Hb_000510_350--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_000510_350--Hb_124207_010 Hb_025030_010 Hb_025030_010 Hb_000510_350--Hb_025030_010 Hb_000699_200--Hb_000473_010 Hb_000699_200--Hb_002193_050 Hb_001511_130 Hb_001511_130 Hb_000699_200--Hb_001511_130 Hb_000699_200--Hb_006124_040 Hb_000473_010--Hb_002193_050 Hb_002290_100 Hb_002290_100 Hb_000473_010--Hb_002290_100 Hb_000473_010--Hb_001511_130 Hb_168039_020--Hb_002290_100 Hb_051450_010 Hb_051450_010 Hb_168039_020--Hb_051450_010 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_022630_010 Hb_022630_010 Hb_002193_050--Hb_022630_010 Hb_005648_030 Hb_005648_030 Hb_002193_050--Hb_005648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27758 0.132675 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126437 0

CAGE analysis