Hb_051450_010

Information

Type -
Description -
Location Contig51450: 2-740
Sequence    

Annotation

kegg
ID rcu:RCOM_1375760
description hypothetical protein
nr
ID XP_002523770.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051450_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_025030_010 0.0999257193 - - -
3 Hb_168039_020 0.1186083545 - - -
4 Hb_000510_350 0.1347428906 - - Putative polyprotein [Oryza sativa Japonica Group]
5 Hb_000389_250 0.1414225889 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21556 [Jatropha curcas]
6 Hb_000890_190 0.1509487917 - - glutaredoxin, grx, putative [Ricinus communis]
7 Hb_002193_050 0.1525190592 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
8 Hb_002290_100 0.1525394312 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
9 Hb_002205_260 0.1528562402 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
10 Hb_000878_150 0.1540853816 - - Gibberellin receptor GID1, putative [Ricinus communis]
11 Hb_028841_020 0.1577720433 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
12 Hb_004931_050 0.1597361117 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
13 Hb_055706_010 0.1610066816 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
14 Hb_001021_110 0.1673005363 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
15 Hb_005882_020 0.1703617057 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_007433_020 0.1733677801 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_003683_090 0.1740597447 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_001568_060 0.1782837438 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
19 Hb_175087_010 0.1798147731 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
20 Hb_000523_060 0.1836678536 - - -

Gene co-expression network

sample Hb_051450_010 Hb_051450_010 Hb_025030_010 Hb_025030_010 Hb_051450_010--Hb_025030_010 Hb_168039_020 Hb_168039_020 Hb_051450_010--Hb_168039_020 Hb_000510_350 Hb_000510_350 Hb_051450_010--Hb_000510_350 Hb_000389_250 Hb_000389_250 Hb_051450_010--Hb_000389_250 Hb_000890_190 Hb_000890_190 Hb_051450_010--Hb_000890_190 Hb_002193_050 Hb_002193_050 Hb_051450_010--Hb_002193_050 Hb_028841_020 Hb_028841_020 Hb_025030_010--Hb_028841_020 Hb_001568_060 Hb_001568_060 Hb_025030_010--Hb_001568_060 Hb_001021_110 Hb_001021_110 Hb_025030_010--Hb_001021_110 Hb_007433_020 Hb_007433_020 Hb_025030_010--Hb_007433_020 Hb_025030_010--Hb_000510_350 Hb_168039_020--Hb_000510_350 Hb_002290_100 Hb_002290_100 Hb_168039_020--Hb_002290_100 Hb_168039_020--Hb_000890_190 Hb_003683_090 Hb_003683_090 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_000510_350--Hb_000890_190 Hb_000510_350--Hb_003683_090 Hb_012553_010 Hb_012553_010 Hb_000510_350--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_000510_350--Hb_124207_010 Hb_000836_590 Hb_000836_590 Hb_000389_250--Hb_000836_590 Hb_002205_260 Hb_002205_260 Hb_000389_250--Hb_002205_260 Hb_055706_010 Hb_055706_010 Hb_000389_250--Hb_055706_010 Hb_089140_020 Hb_089140_020 Hb_000389_250--Hb_089140_020 Hb_000389_250--Hb_025030_010 Hb_000890_190--Hb_003683_090 Hb_000699_200 Hb_000699_200 Hb_000890_190--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_000890_190--Hb_000473_010 Hb_000890_190--Hb_002193_050 Hb_002193_050--Hb_000473_010 Hb_002193_050--Hb_000699_200 Hb_002193_050--Hb_003683_090 Hb_022630_010 Hb_022630_010 Hb_002193_050--Hb_022630_010 Hb_005648_030 Hb_005648_030 Hb_002193_050--Hb_005648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128936 11.9249 2.48745 0.278996 0.0370774 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.26279 0

CAGE analysis