Hb_003683_090

Information

Type -
Description -
Location Contig3683: 110999-114994
Sequence    

Annotation

kegg
ID rcu:RCOM_0964770
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517788.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9CA28
description Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=1 SV=1
trembl
ID B9RVL9
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964770 PE=4 SV=1
Gene Ontology
ID GO:0045552
description tetraketide alpha-pyrone reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37881: 112153-112559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_090 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_000890_190 0.0403861255 - - glutaredoxin, grx, putative [Ricinus communis]
3 Hb_000699_200 0.0507610186 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
4 Hb_000473_010 0.0632811228 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
5 Hb_006124_040 0.0888346778 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_002193_050 0.0907274306 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
7 Hb_000510_350 0.1026174291 - - Putative polyprotein [Oryza sativa Japonica Group]
8 Hb_001403_070 0.1157968288 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
9 Hb_002648_020 0.1202277654 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
10 Hb_168039_020 0.1266450147 - - -
11 Hb_001511_130 0.1328520426 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
12 Hb_002290_100 0.1356225133 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
13 Hb_006452_140 0.1449263929 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
14 Hb_030312_060 0.1451348174 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
15 Hb_022630_010 0.1514757545 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_005648_030 0.1554782315 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
17 Hb_001486_130 0.1587526192 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
18 Hb_001749_020 0.1587823465 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
19 Hb_007850_050 0.1616182181 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
20 Hb_078477_010 0.1624667676 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_003683_090 Hb_003683_090 Hb_000890_190 Hb_000890_190 Hb_003683_090--Hb_000890_190 Hb_000699_200 Hb_000699_200 Hb_003683_090--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_003683_090--Hb_000473_010 Hb_006124_040 Hb_006124_040 Hb_003683_090--Hb_006124_040 Hb_002193_050 Hb_002193_050 Hb_003683_090--Hb_002193_050 Hb_000510_350 Hb_000510_350 Hb_003683_090--Hb_000510_350 Hb_000890_190--Hb_000510_350 Hb_000890_190--Hb_000699_200 Hb_000890_190--Hb_000473_010 Hb_168039_020 Hb_168039_020 Hb_000890_190--Hb_168039_020 Hb_000890_190--Hb_002193_050 Hb_000699_200--Hb_000473_010 Hb_000699_200--Hb_002193_050 Hb_001511_130 Hb_001511_130 Hb_000699_200--Hb_001511_130 Hb_000699_200--Hb_006124_040 Hb_000473_010--Hb_002193_050 Hb_002290_100 Hb_002290_100 Hb_000473_010--Hb_002290_100 Hb_000473_010--Hb_001511_130 Hb_006452_140 Hb_006452_140 Hb_006124_040--Hb_006452_140 Hb_030312_060 Hb_030312_060 Hb_006124_040--Hb_030312_060 Hb_002648_020 Hb_002648_020 Hb_006124_040--Hb_002648_020 Hb_001403_070 Hb_001403_070 Hb_006124_040--Hb_001403_070 Hb_022630_010 Hb_022630_010 Hb_002193_050--Hb_022630_010 Hb_005648_030 Hb_005648_030 Hb_002193_050--Hb_005648_030 Hb_000510_350--Hb_168039_020 Hb_012553_010 Hb_012553_010 Hb_000510_350--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_000510_350--Hb_124207_010 Hb_025030_010 Hb_025030_010 Hb_000510_350--Hb_025030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32833 0.103344 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103445 0

CAGE analysis