Hb_002290_100

Information

Type transcription factor
Description TF Family: NAC
Location Contig2290: 153561-154581
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22580g
description POPTRDRAFT_763062; hypothetical protein
nr
ID XP_012074436.1
description PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4N5M1
description NAC transcription factor 041 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 90-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_100 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
2 Hb_168039_020 0.0861612637 - - -
3 Hb_000473_010 0.1019011253 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
4 Hb_168436_010 0.1229276457 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
5 Hb_021409_060 0.1230697022 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
6 Hb_002127_010 0.1231250673 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
7 Hb_001268_360 0.1239818731 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
8 Hb_010896_010 0.1250951152 - - -
9 Hb_004899_160 0.1258196315 - - -
10 Hb_000890_190 0.1270984719 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_067197_020 0.1276076227 - - -
12 Hb_156055_020 0.1276810019 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002193_050 0.1287546409 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
14 Hb_119789_010 0.1303442697 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
15 Hb_000699_200 0.1312700199 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
16 Hb_081445_010 0.1343491641 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
17 Hb_101733_020 0.1345925983 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
18 Hb_003683_090 0.1356225133 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000672_070 0.1385607222 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
20 Hb_000896_140 0.1389567693 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002290_100 Hb_002290_100 Hb_168039_020 Hb_168039_020 Hb_002290_100--Hb_168039_020 Hb_000473_010 Hb_000473_010 Hb_002290_100--Hb_000473_010 Hb_168436_010 Hb_168436_010 Hb_002290_100--Hb_168436_010 Hb_021409_060 Hb_021409_060 Hb_002290_100--Hb_021409_060 Hb_002127_010 Hb_002127_010 Hb_002290_100--Hb_002127_010 Hb_001268_360 Hb_001268_360 Hb_002290_100--Hb_001268_360 Hb_000510_350 Hb_000510_350 Hb_168039_020--Hb_000510_350 Hb_000890_190 Hb_000890_190 Hb_168039_020--Hb_000890_190 Hb_051450_010 Hb_051450_010 Hb_168039_020--Hb_051450_010 Hb_003683_090 Hb_003683_090 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_000699_200 Hb_000699_200 Hb_000473_010--Hb_000699_200 Hb_000473_010--Hb_003683_090 Hb_002193_050 Hb_002193_050 Hb_000473_010--Hb_002193_050 Hb_000473_010--Hb_000890_190 Hb_001511_130 Hb_001511_130 Hb_000473_010--Hb_001511_130 Hb_168436_010--Hb_021409_060 Hb_168436_010--Hb_002127_010 Hb_168436_010--Hb_001268_360 Hb_010896_010 Hb_010896_010 Hb_168436_010--Hb_010896_010 Hb_004899_160 Hb_004899_160 Hb_168436_010--Hb_004899_160 Hb_156055_020 Hb_156055_020 Hb_168436_010--Hb_156055_020 Hb_021409_060--Hb_002127_010 Hb_021409_060--Hb_004899_160 Hb_021409_060--Hb_001268_360 Hb_021409_060--Hb_156055_020 Hb_021409_060--Hb_010896_010 Hb_002127_010--Hb_001268_360 Hb_002127_010--Hb_010896_010 Hb_067197_020 Hb_067197_020 Hb_002127_010--Hb_067197_020 Hb_002127_010--Hb_004899_160 Hb_001268_360--Hb_010896_010 Hb_001268_360--Hb_067197_020 Hb_081445_010 Hb_081445_010 Hb_001268_360--Hb_081445_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.568206 0.10705 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0208063 0

CAGE analysis