Hb_000510_350

Information

Type -
Description -
Location Contig510: 323319-332089
Sequence    

Annotation

kegg
ID obr:102715003
description uncharacterized LOC102715003
nr
ID AAL77156.1
description Putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q7G671
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNAa0019N10.27 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46325: 331548-332032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_350 0.0 - - Putative polyprotein [Oryza sativa Japonica Group]
2 Hb_000890_190 0.0626066739 - - glutaredoxin, grx, putative [Ricinus communis]
3 Hb_168039_020 0.0729712426 - - -
4 Hb_003683_090 0.1026174291 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_012553_010 0.1218305763 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
6 Hb_124207_010 0.1312317962 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_025030_010 0.1335715547 - - -
8 Hb_000523_060 0.1338294603 - - -
9 Hb_051450_010 0.1347428906 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000473_010 0.1429660365 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
11 Hb_002290_100 0.1430491132 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
12 Hb_000878_150 0.1456238865 - - Gibberellin receptor GID1, putative [Ricinus communis]
13 Hb_000699_200 0.1473084811 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
14 Hb_001268_070 0.1480367822 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002193_050 0.151078136 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
16 Hb_002787_100 0.15482575 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
17 Hb_002648_020 0.1575902941 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
18 Hb_000291_020 0.1576646754 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
19 Hb_006124_040 0.1668822729 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_001486_130 0.1671412842 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000510_350 Hb_000510_350 Hb_000890_190 Hb_000890_190 Hb_000510_350--Hb_000890_190 Hb_168039_020 Hb_168039_020 Hb_000510_350--Hb_168039_020 Hb_003683_090 Hb_003683_090 Hb_000510_350--Hb_003683_090 Hb_012553_010 Hb_012553_010 Hb_000510_350--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_000510_350--Hb_124207_010 Hb_025030_010 Hb_025030_010 Hb_000510_350--Hb_025030_010 Hb_000890_190--Hb_003683_090 Hb_000699_200 Hb_000699_200 Hb_000890_190--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_000890_190--Hb_000473_010 Hb_000890_190--Hb_168039_020 Hb_002193_050 Hb_002193_050 Hb_000890_190--Hb_002193_050 Hb_002290_100 Hb_002290_100 Hb_168039_020--Hb_002290_100 Hb_051450_010 Hb_051450_010 Hb_168039_020--Hb_051450_010 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_003683_090--Hb_000699_200 Hb_003683_090--Hb_000473_010 Hb_006124_040 Hb_006124_040 Hb_003683_090--Hb_006124_040 Hb_003683_090--Hb_002193_050 Hb_001268_070 Hb_001268_070 Hb_012553_010--Hb_001268_070 Hb_012553_010--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_012553_010--Hb_166257_010 Hb_000291_020 Hb_000291_020 Hb_012553_010--Hb_000291_020 Hb_000070_140 Hb_000070_140 Hb_012553_010--Hb_000070_140 Hb_002787_100 Hb_002787_100 Hb_012553_010--Hb_002787_100 Hb_124207_010--Hb_000291_020 Hb_124207_010--Hb_002787_100 Hb_124207_010--Hb_166257_010 Hb_000523_060 Hb_000523_060 Hb_124207_010--Hb_000523_060 Hb_124207_010--Hb_001268_070 Hb_025030_010--Hb_051450_010 Hb_028841_020 Hb_028841_020 Hb_025030_010--Hb_028841_020 Hb_001568_060 Hb_001568_060 Hb_025030_010--Hb_001568_060 Hb_001021_110 Hb_001021_110 Hb_025030_010--Hb_001021_110 Hb_007433_020 Hb_007433_020 Hb_025030_010--Hb_007433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0825749 0.0123695 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0119159 0

CAGE analysis