Hb_001021_110

Information

Type -
Description -
Location Contig1021: 111834-116948
Sequence    

Annotation

kegg
ID rcu:RCOM_0618610
description Potassium transporter, putative
nr
ID XP_012082710.1
description PREDICTED: potassium transporter 5-like [Jatropha curcas]
swissprot
ID Q5JK32
description Potassium transporter 5 OS=Oryza sativa subsp. japonica GN=HAK5 PE=2 SV=2
trembl
ID B9SS75
description Potassium transporter OS=Ricinus communis GN=RCOM_0618610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00975: 111992-115824 , PASA_asmbl_00976: 115950-116338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_110 0.0 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
2 Hb_004785_120 0.0947858231 - - Receptor protein kinase 1 [Theobroma cacao]
3 Hb_000523_060 0.1255396212 - - -
4 Hb_025030_010 0.1263820922 - - -
5 Hb_000996_200 0.129710307 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
6 Hb_005545_090 0.1335016204 - - -
7 Hb_002481_070 0.1419155158 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_002787_100 0.1517757677 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
9 Hb_012545_080 0.1581329783 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
10 Hb_055147_010 0.1583722326 - - thioredoxin H-type 7 [Hevea brasiliensis]
11 Hb_000878_150 0.1595602054 - - Gibberellin receptor GID1, putative [Ricinus communis]
12 Hb_012018_020 0.1622720305 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
13 Hb_001514_100 0.1630648896 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
14 Hb_157980_010 0.1644352576 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_108802_010 0.1669737743 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
16 Hb_051450_010 0.1673005363 - - conserved hypothetical protein [Ricinus communis]
17 Hb_028841_020 0.170178387 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
18 Hb_002085_070 0.1745376233 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000291_020 0.1747646993 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
20 Hb_001300_120 0.1782253639 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001021_110 Hb_001021_110 Hb_004785_120 Hb_004785_120 Hb_001021_110--Hb_004785_120 Hb_000523_060 Hb_000523_060 Hb_001021_110--Hb_000523_060 Hb_025030_010 Hb_025030_010 Hb_001021_110--Hb_025030_010 Hb_000996_200 Hb_000996_200 Hb_001021_110--Hb_000996_200 Hb_005545_090 Hb_005545_090 Hb_001021_110--Hb_005545_090 Hb_002481_070 Hb_002481_070 Hb_001021_110--Hb_002481_070 Hb_055147_010 Hb_055147_010 Hb_004785_120--Hb_055147_010 Hb_004785_120--Hb_000996_200 Hb_012404_050 Hb_012404_050 Hb_004785_120--Hb_012404_050 Hb_012545_080 Hb_012545_080 Hb_004785_120--Hb_012545_080 Hb_000110_330 Hb_000110_330 Hb_004785_120--Hb_000110_330 Hb_002787_100 Hb_002787_100 Hb_000523_060--Hb_002787_100 Hb_000523_060--Hb_002481_070 Hb_000291_020 Hb_000291_020 Hb_000523_060--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000523_060--Hb_124207_010 Hb_000878_150 Hb_000878_150 Hb_000523_060--Hb_000878_150 Hb_000523_060--Hb_005545_090 Hb_051450_010 Hb_051450_010 Hb_025030_010--Hb_051450_010 Hb_028841_020 Hb_028841_020 Hb_025030_010--Hb_028841_020 Hb_001568_060 Hb_001568_060 Hb_025030_010--Hb_001568_060 Hb_007433_020 Hb_007433_020 Hb_025030_010--Hb_007433_020 Hb_000510_350 Hb_000510_350 Hb_025030_010--Hb_000510_350 Hb_000996_200--Hb_012545_080 Hb_005357_270 Hb_005357_270 Hb_000996_200--Hb_005357_270 Hb_006634_080 Hb_006634_080 Hb_000996_200--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_000996_200--Hb_157980_010 Hb_004459_110 Hb_004459_110 Hb_000996_200--Hb_004459_110 Hb_001300_120 Hb_001300_120 Hb_005545_090--Hb_001300_120 Hb_000856_330 Hb_000856_330 Hb_005545_090--Hb_000856_330 Hb_005545_090--Hb_002481_070 Hb_019952_010 Hb_019952_010 Hb_005545_090--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_005545_090--Hb_000507_010 Hb_000408_010 Hb_000408_010 Hb_002481_070--Hb_000408_010 Hb_002481_070--Hb_002787_100 Hb_001998_190 Hb_001998_190 Hb_002481_070--Hb_001998_190 Hb_002481_070--Hb_000291_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00868559 46.9787 17.6638 1.61498 0 0.00613185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0159195 0 0.0478535 12.3437 0.453614

CAGE analysis