Hb_000856_330

Information

Type -
Description -
Location Contig856: 289167-292258
Sequence    

Annotation

kegg
ID cam:101490754
description multiple C2 and transmembrane domain-containing protein 2-like
nr
ID XP_004508771.1
description PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A0A0LTB2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045520 PE=4 SV=1
Gene Ontology
ID GO:0009628
description multiple c2 and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_330 0.0 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
2 Hb_001300_120 0.021081482 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
3 Hb_019952_010 0.0667081055 - - -
4 Hb_011671_200 0.0720860366 - - -
5 Hb_000976_420 0.0729635437 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000507_010 0.0786289326 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
7 Hb_000933_120 0.0788012951 - - hypothetical protein L484_011925 [Morus notabilis]
8 Hb_005545_090 0.0890026778 - - -
9 Hb_001998_190 0.1239112621 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
10 Hb_001246_150 0.1617832549 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
11 Hb_002481_070 0.1646025599 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_000408_010 0.1650846089 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
13 Hb_004725_040 0.165493272 - - -
14 Hb_005211_110 0.1692579171 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
15 Hb_048308_010 0.1701011699 - - Peroxidase superfamily protein [Theobroma cacao]
16 Hb_175087_010 0.1777067954 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
17 Hb_004785_120 0.1912536292 - - Receptor protein kinase 1 [Theobroma cacao]
18 Hb_001021_110 0.1918770143 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
19 Hb_005433_030 0.1927853605 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
20 Hb_000523_060 0.1963066856 - - -

Gene co-expression network

sample Hb_000856_330 Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_000856_330--Hb_001300_120 Hb_019952_010 Hb_019952_010 Hb_000856_330--Hb_019952_010 Hb_011671_200 Hb_011671_200 Hb_000856_330--Hb_011671_200 Hb_000976_420 Hb_000976_420 Hb_000856_330--Hb_000976_420 Hb_000507_010 Hb_000507_010 Hb_000856_330--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_000856_330--Hb_000933_120 Hb_005545_090 Hb_005545_090 Hb_001300_120--Hb_005545_090 Hb_001300_120--Hb_019952_010 Hb_001300_120--Hb_000507_010 Hb_001300_120--Hb_000933_120 Hb_001300_120--Hb_011671_200 Hb_019952_010--Hb_000507_010 Hb_019952_010--Hb_000933_120 Hb_001998_190 Hb_001998_190 Hb_019952_010--Hb_001998_190 Hb_019952_010--Hb_000976_420 Hb_011671_200--Hb_000976_420 Hb_004725_040 Hb_004725_040 Hb_011671_200--Hb_004725_040 Hb_011671_200--Hb_000933_120 Hb_011671_200--Hb_019952_010 Hb_000976_420--Hb_000933_120 Hb_000976_420--Hb_000507_010 Hb_000976_420--Hb_001300_120 Hb_000507_010--Hb_000933_120 Hb_000507_010--Hb_001998_190 Hb_000933_120--Hb_001998_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324842 0.02667 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00823434 0

CAGE analysis