Hb_011671_200

Information

Type -
Description -
Location Contig11671: 169893-171070
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_200 0.0 - - -
2 Hb_000976_420 0.0506213648 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000856_330 0.0720860366 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
4 Hb_001300_120 0.0920312391 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
5 Hb_004725_040 0.093837386 - - -
6 Hb_000933_120 0.0964095361 - - hypothetical protein L484_011925 [Morus notabilis]
7 Hb_019952_010 0.099693287 - - -
8 Hb_000507_010 0.104947459 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
9 Hb_001246_150 0.1367520271 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
10 Hb_002435_070 0.1398447299 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
11 Hb_005211_110 0.140346522 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
12 Hb_048308_010 0.1413782207 - - Peroxidase superfamily protein [Theobroma cacao]
13 Hb_001998_190 0.1505120584 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
14 Hb_008764_010 0.152881072 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
15 Hb_005545_090 0.1604078644 - - -
16 Hb_038601_010 0.1745406578 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
17 Hb_006570_130 0.1812062107 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005433_030 0.1834956938 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
19 Hb_028707_060 0.198887191 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
20 Hb_001405_250 0.2074703438 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_200 Hb_011671_200 Hb_000976_420 Hb_000976_420 Hb_011671_200--Hb_000976_420 Hb_000856_330 Hb_000856_330 Hb_011671_200--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_011671_200--Hb_001300_120 Hb_004725_040 Hb_004725_040 Hb_011671_200--Hb_004725_040 Hb_000933_120 Hb_000933_120 Hb_011671_200--Hb_000933_120 Hb_019952_010 Hb_019952_010 Hb_011671_200--Hb_019952_010 Hb_000976_420--Hb_000933_120 Hb_000976_420--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_000976_420--Hb_000507_010 Hb_000976_420--Hb_000856_330 Hb_000976_420--Hb_001300_120 Hb_000856_330--Hb_001300_120 Hb_000856_330--Hb_019952_010 Hb_000856_330--Hb_000507_010 Hb_000856_330--Hb_000933_120 Hb_005545_090 Hb_005545_090 Hb_001300_120--Hb_005545_090 Hb_001300_120--Hb_019952_010 Hb_001300_120--Hb_000507_010 Hb_001300_120--Hb_000933_120 Hb_002435_070 Hb_002435_070 Hb_004725_040--Hb_002435_070 Hb_038601_010 Hb_038601_010 Hb_004725_040--Hb_038601_010 Hb_006570_130 Hb_006570_130 Hb_004725_040--Hb_006570_130 Hb_008764_010 Hb_008764_010 Hb_004725_040--Hb_008764_010 Hb_004725_040--Hb_000976_420 Hb_000933_120--Hb_000507_010 Hb_000933_120--Hb_019952_010 Hb_001998_190 Hb_001998_190 Hb_000933_120--Hb_001998_190 Hb_019952_010--Hb_000507_010 Hb_019952_010--Hb_001998_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0543207 0.0635571 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0147208 0

CAGE analysis