Hb_000976_420

Information

Type -
Description -
Location Contig976: 339869-340457
Sequence    

Annotation

kegg
ID rcu:RCOM_1576960
description hypothetical protein
nr
ID XP_002513450.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RI81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_420 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000933_120 0.0504273969 - - hypothetical protein L484_011925 [Morus notabilis]
3 Hb_011671_200 0.0506213648 - - -
4 Hb_019952_010 0.0603963426 - - -
5 Hb_000507_010 0.0612232366 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
6 Hb_000856_330 0.0729635437 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
7 Hb_001300_120 0.0930111271 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
8 Hb_001246_150 0.0944875842 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
9 Hb_005211_110 0.1004149119 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
10 Hb_048308_010 0.1013644027 - - Peroxidase superfamily protein [Theobroma cacao]
11 Hb_001998_190 0.1032693497 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
12 Hb_004725_040 0.1219056706 - - -
13 Hb_008764_010 0.1376638403 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
14 Hb_005545_090 0.1479035266 - - -
15 Hb_002435_070 0.1588342915 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
16 Hb_000203_030 0.1651346132 - - -
17 Hb_000408_010 0.1651929866 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
18 Hb_005433_030 0.1693728132 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
19 Hb_000059_290 0.1902651557 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
20 Hb_002481_070 0.1921344911 - - hypothetical protein JCGZ_18787 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_420 Hb_000976_420 Hb_000933_120 Hb_000933_120 Hb_000976_420--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_000976_420--Hb_011671_200 Hb_019952_010 Hb_019952_010 Hb_000976_420--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_000976_420--Hb_000507_010 Hb_000856_330 Hb_000856_330 Hb_000976_420--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_000976_420--Hb_001300_120 Hb_000933_120--Hb_000507_010 Hb_000933_120--Hb_019952_010 Hb_001998_190 Hb_001998_190 Hb_000933_120--Hb_001998_190 Hb_000933_120--Hb_000856_330 Hb_000933_120--Hb_001300_120 Hb_011671_200--Hb_000856_330 Hb_011671_200--Hb_001300_120 Hb_004725_040 Hb_004725_040 Hb_011671_200--Hb_004725_040 Hb_011671_200--Hb_000933_120 Hb_011671_200--Hb_019952_010 Hb_019952_010--Hb_000507_010 Hb_019952_010--Hb_001998_190 Hb_019952_010--Hb_000856_330 Hb_019952_010--Hb_001300_120 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000856_330 Hb_000507_010--Hb_001300_120 Hb_000856_330--Hb_001300_120 Hb_005545_090 Hb_005545_090 Hb_001300_120--Hb_005545_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224159 0.25438 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.085029 0

CAGE analysis