Hb_004725_040

Information

Type -
Description -
Location Contig4725: 58318-61087
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004725_040 0.0 - - -
2 Hb_002435_070 0.0495630799 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
3 Hb_038601_010 0.0812423921 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
4 Hb_011671_200 0.093837386 - - -
5 Hb_006570_130 0.1075526734 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008764_010 0.1148031436 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
7 Hb_000976_420 0.1219056706 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028707_060 0.1436997621 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
9 Hb_005211_110 0.1559739558 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
10 Hb_048308_010 0.1569298531 - - Peroxidase superfamily protein [Theobroma cacao]
11 Hb_000604_080 0.1583629897 - - Fgenesh protein [Medicago truncatula]
12 Hb_001246_150 0.1589334661 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
13 Hb_000856_330 0.165493272 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
14 Hb_000933_120 0.1711492344 - - hypothetical protein L484_011925 [Morus notabilis]
15 Hb_019952_010 0.1815351668 - - -
16 Hb_000507_010 0.182353767 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
17 Hb_001300_120 0.184943723 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
18 Hb_006478_140 0.1976328415 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
19 Hb_011622_010 0.203666399 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
20 Hb_005433_030 0.2114862343 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_004725_040 Hb_004725_040 Hb_002435_070 Hb_002435_070 Hb_004725_040--Hb_002435_070 Hb_038601_010 Hb_038601_010 Hb_004725_040--Hb_038601_010 Hb_011671_200 Hb_011671_200 Hb_004725_040--Hb_011671_200 Hb_006570_130 Hb_006570_130 Hb_004725_040--Hb_006570_130 Hb_008764_010 Hb_008764_010 Hb_004725_040--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_004725_040--Hb_000976_420 Hb_002435_070--Hb_038601_010 Hb_002435_070--Hb_008764_010 Hb_002435_070--Hb_006570_130 Hb_002435_070--Hb_011671_200 Hb_000604_080 Hb_000604_080 Hb_002435_070--Hb_000604_080 Hb_038601_010--Hb_006570_130 Hb_028707_060 Hb_028707_060 Hb_038601_010--Hb_028707_060 Hb_038601_010--Hb_008764_010 Hb_154114_020 Hb_154114_020 Hb_038601_010--Hb_154114_020 Hb_011671_200--Hb_000976_420 Hb_000856_330 Hb_000856_330 Hb_011671_200--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_011671_200--Hb_001300_120 Hb_000933_120 Hb_000933_120 Hb_011671_200--Hb_000933_120 Hb_019952_010 Hb_019952_010 Hb_011671_200--Hb_019952_010 Hb_006570_130--Hb_028707_060 Hb_000380_030 Hb_000380_030 Hb_006570_130--Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_006570_130--Hb_000787_120 Hb_005211_110 Hb_005211_110 Hb_008764_010--Hb_005211_110 Hb_048308_010 Hb_048308_010 Hb_008764_010--Hb_048308_010 Hb_001246_150 Hb_001246_150 Hb_008764_010--Hb_001246_150 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_000976_420--Hb_000933_120 Hb_000976_420--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_000976_420--Hb_000507_010 Hb_000976_420--Hb_000856_330 Hb_000976_420--Hb_001300_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0626922 0.11593 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0181986 0

CAGE analysis