Hb_005211_110

Information

Type -
Description -
Location Contig5211: 75996-76877
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13790g
description POPTRDRAFT_225606; hypothetical protein
nr
ID XP_002314879.2
description hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
swissprot
ID Q9SX26
description Protein PLANT CADMIUM RESISTANCE 12 OS=Arabidopsis thaliana GN=PCR12 PE=2 SV=2
trembl
ID B9HWK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13790g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_110 0.0 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
2 Hb_048308_010 0.0010703378 - - Peroxidase superfamily protein [Theobroma cacao]
3 Hb_001246_150 0.0105890231 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
4 Hb_008764_010 0.083484186 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
5 Hb_000976_420 0.1004149119 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000933_120 0.1035000642 - - hypothetical protein L484_011925 [Morus notabilis]
7 Hb_000507_010 0.1128618676 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
8 Hb_001998_190 0.1141705615 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
9 Hb_019952_010 0.123229302 - - -
10 Hb_000203_030 0.1246950067 - - -
11 Hb_142734_020 0.1311121609 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
12 Hb_011671_200 0.140346522 - - -
13 Hb_004725_040 0.1559739558 - - -
14 Hb_000059_290 0.1560494634 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
15 Hb_002435_070 0.1648566552 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
16 Hb_000856_330 0.1692579171 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
17 Hb_000408_010 0.1752055486 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
18 Hb_005433_030 0.1813692254 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
19 Hb_001300_120 0.1869483821 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
20 Hb_002374_360 0.1885415592 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]

Gene co-expression network

sample Hb_005211_110 Hb_005211_110 Hb_048308_010 Hb_048308_010 Hb_005211_110--Hb_048308_010 Hb_001246_150 Hb_001246_150 Hb_005211_110--Hb_001246_150 Hb_008764_010 Hb_008764_010 Hb_005211_110--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_005211_110--Hb_000976_420 Hb_000933_120 Hb_000933_120 Hb_005211_110--Hb_000933_120 Hb_000507_010 Hb_000507_010 Hb_005211_110--Hb_000507_010 Hb_048308_010--Hb_001246_150 Hb_048308_010--Hb_008764_010 Hb_048308_010--Hb_000976_420 Hb_048308_010--Hb_000933_120 Hb_048308_010--Hb_000507_010 Hb_001246_150--Hb_008764_010 Hb_001246_150--Hb_000933_120 Hb_001246_150--Hb_000976_420 Hb_001246_150--Hb_000507_010 Hb_002435_070 Hb_002435_070 Hb_008764_010--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_008764_010--Hb_004725_040 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_000976_420--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_000976_420--Hb_011671_200 Hb_019952_010 Hb_019952_010 Hb_000976_420--Hb_019952_010 Hb_000976_420--Hb_000507_010 Hb_000856_330 Hb_000856_330 Hb_000976_420--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_000976_420--Hb_001300_120 Hb_000933_120--Hb_000507_010 Hb_000933_120--Hb_019952_010 Hb_001998_190 Hb_001998_190 Hb_000933_120--Hb_001998_190 Hb_000933_120--Hb_000856_330 Hb_000933_120--Hb_001300_120 Hb_000507_010--Hb_019952_010 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000856_330 Hb_000507_010--Hb_001300_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.063032 0.0999719 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0465783 0

CAGE analysis