Hb_008764_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig8764: 8961-10868
Sequence    

Annotation

kegg
ID cic:CICLE_v10006631mg
description hypothetical protein
nr
ID XP_012086130.1
description PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008764_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
2 Hb_005211_110 0.083484186 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
3 Hb_048308_010 0.0838579843 - - Peroxidase superfamily protein [Theobroma cacao]
4 Hb_001246_150 0.0927917922 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
5 Hb_002435_070 0.0998642944 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
6 Hb_004725_040 0.1148031436 - - -
7 Hb_142734_020 0.1372641925 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
8 Hb_000976_420 0.1376638403 - - conserved hypothetical protein [Ricinus communis]
9 Hb_038601_010 0.1383435851 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
10 Hb_011671_200 0.152881072 - - -
11 Hb_000933_120 0.1659219961 - - hypothetical protein L484_011925 [Morus notabilis]
12 Hb_000507_010 0.1774720711 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
13 Hb_019952_010 0.1843577355 - - -
14 Hb_001998_190 0.1920932523 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
15 Hb_000604_080 0.1936484445 - - Fgenesh protein [Medicago truncatula]
16 Hb_154114_020 0.1973486704 - - -
17 Hb_006570_130 0.203110078 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005433_030 0.205345231 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
19 Hb_000203_030 0.2064523219 - - -
20 Hb_000856_330 0.2085169064 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]

Gene co-expression network

sample Hb_008764_010 Hb_008764_010 Hb_005211_110 Hb_005211_110 Hb_008764_010--Hb_005211_110 Hb_048308_010 Hb_048308_010 Hb_008764_010--Hb_048308_010 Hb_001246_150 Hb_001246_150 Hb_008764_010--Hb_001246_150 Hb_002435_070 Hb_002435_070 Hb_008764_010--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_008764_010--Hb_004725_040 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_005211_110--Hb_048308_010 Hb_005211_110--Hb_001246_150 Hb_000976_420 Hb_000976_420 Hb_005211_110--Hb_000976_420 Hb_000933_120 Hb_000933_120 Hb_005211_110--Hb_000933_120 Hb_000507_010 Hb_000507_010 Hb_005211_110--Hb_000507_010 Hb_048308_010--Hb_001246_150 Hb_048308_010--Hb_000976_420 Hb_048308_010--Hb_000933_120 Hb_048308_010--Hb_000507_010 Hb_001246_150--Hb_000933_120 Hb_001246_150--Hb_000976_420 Hb_001246_150--Hb_000507_010 Hb_038601_010 Hb_038601_010 Hb_002435_070--Hb_038601_010 Hb_002435_070--Hb_004725_040 Hb_006570_130 Hb_006570_130 Hb_002435_070--Hb_006570_130 Hb_011671_200 Hb_011671_200 Hb_002435_070--Hb_011671_200 Hb_000604_080 Hb_000604_080 Hb_002435_070--Hb_000604_080 Hb_004725_040--Hb_038601_010 Hb_004725_040--Hb_011671_200 Hb_004725_040--Hb_006570_130 Hb_004725_040--Hb_000976_420 Hb_142734_020--Hb_048308_010 Hb_142734_020--Hb_005211_110 Hb_142734_020--Hb_001246_150 Hb_174514_010 Hb_174514_010 Hb_142734_020--Hb_174514_010 Hb_007645_110 Hb_007645_110 Hb_142734_020--Hb_007645_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.01374 0.0319478 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00987585 0

CAGE analysis