Hb_048308_010

Information

Type -
Description -
Location Contig48308: 273-826
Sequence    

Annotation

kegg
ID tcc:TCM_019760
description Peroxidase superfamily protein
nr
ID XP_007033588.1
description Peroxidase superfamily protein [Theobroma cacao]
swissprot
ID P22195
description Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2
trembl
ID A0A061EQA8
description Peroxidase OS=Theobroma cacao GN=TCM_019760 PE=3 SV=1
Gene Ontology
ID GO:0005576
description cationic peroxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048308_010 0.0 - - Peroxidase superfamily protein [Theobroma cacao]
2 Hb_005211_110 0.0010703378 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
3 Hb_001246_150 0.0108209232 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
4 Hb_008764_010 0.0838579843 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
5 Hb_000976_420 0.1013644027 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000933_120 0.1041058797 - - hypothetical protein L484_011925 [Morus notabilis]
7 Hb_000507_010 0.1134024464 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
8 Hb_001998_190 0.1142822127 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
9 Hb_019952_010 0.1238254274 - - -
10 Hb_000203_030 0.1241452891 - - -
11 Hb_142734_020 0.1302333692 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
12 Hb_011671_200 0.1413782207 - - -
13 Hb_000059_290 0.1555074723 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
14 Hb_004725_040 0.1569298531 - - -
15 Hb_002435_070 0.1656387395 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
16 Hb_000856_330 0.1701011699 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
17 Hb_000408_010 0.1751216807 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
18 Hb_005433_030 0.1817190996 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
19 Hb_001300_120 0.1877481562 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
20 Hb_002374_360 0.1886766745 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]

Gene co-expression network

sample Hb_048308_010 Hb_048308_010 Hb_005211_110 Hb_005211_110 Hb_048308_010--Hb_005211_110 Hb_001246_150 Hb_001246_150 Hb_048308_010--Hb_001246_150 Hb_008764_010 Hb_008764_010 Hb_048308_010--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_048308_010--Hb_000976_420 Hb_000933_120 Hb_000933_120 Hb_048308_010--Hb_000933_120 Hb_000507_010 Hb_000507_010 Hb_048308_010--Hb_000507_010 Hb_005211_110--Hb_001246_150 Hb_005211_110--Hb_008764_010 Hb_005211_110--Hb_000976_420 Hb_005211_110--Hb_000933_120 Hb_005211_110--Hb_000507_010 Hb_001246_150--Hb_008764_010 Hb_001246_150--Hb_000933_120 Hb_001246_150--Hb_000976_420 Hb_001246_150--Hb_000507_010 Hb_002435_070 Hb_002435_070 Hb_008764_010--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_008764_010--Hb_004725_040 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_000976_420--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_000976_420--Hb_011671_200 Hb_019952_010 Hb_019952_010 Hb_000976_420--Hb_019952_010 Hb_000976_420--Hb_000507_010 Hb_000856_330 Hb_000856_330 Hb_000976_420--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_000976_420--Hb_001300_120 Hb_000933_120--Hb_000507_010 Hb_000933_120--Hb_019952_010 Hb_001998_190 Hb_001998_190 Hb_000933_120--Hb_001998_190 Hb_000933_120--Hb_000856_330 Hb_000933_120--Hb_001300_120 Hb_000507_010--Hb_019952_010 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000856_330 Hb_000507_010--Hb_001300_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0750487 0.11919 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.055832 0

CAGE analysis