Hb_001300_120

Information

Type -
Description -
Location Contig1300: 89756-95466
Sequence    

Annotation

kegg
ID rcu:RCOM_0556030
description hypothetical protein
nr
ID XP_012082667.1
description PREDICTED: stress response protein nst1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13858 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_120 0.0 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
2 Hb_000856_330 0.021081482 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
3 Hb_005545_090 0.071091506 - - -
4 Hb_019952_010 0.0762041636 - - -
5 Hb_000507_010 0.0888446904 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
6 Hb_000933_120 0.0915513026 - - hypothetical protein L484_011925 [Morus notabilis]
7 Hb_011671_200 0.0920312391 - - -
8 Hb_000976_420 0.0930111271 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001998_190 0.1304636217 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
10 Hb_002481_070 0.1547937484 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_175087_010 0.1603116273 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
12 Hb_000408_010 0.1636950974 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
13 Hb_001021_110 0.1782253639 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_001246_150 0.1790203002 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
15 Hb_000523_060 0.1794447811 - - -
16 Hb_004785_120 0.1823355399 - - Receptor protein kinase 1 [Theobroma cacao]
17 Hb_004725_040 0.184943723 - - -
18 Hb_005211_110 0.1869483821 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
19 Hb_048308_010 0.1877481562 - - Peroxidase superfamily protein [Theobroma cacao]
20 Hb_001405_250 0.194793813 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_120 Hb_001300_120 Hb_000856_330 Hb_000856_330 Hb_001300_120--Hb_000856_330 Hb_005545_090 Hb_005545_090 Hb_001300_120--Hb_005545_090 Hb_019952_010 Hb_019952_010 Hb_001300_120--Hb_019952_010 Hb_000507_010 Hb_000507_010 Hb_001300_120--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_001300_120--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_001300_120--Hb_011671_200 Hb_000856_330--Hb_019952_010 Hb_000856_330--Hb_011671_200 Hb_000976_420 Hb_000976_420 Hb_000856_330--Hb_000976_420 Hb_000856_330--Hb_000507_010 Hb_000856_330--Hb_000933_120 Hb_005545_090--Hb_000856_330 Hb_002481_070 Hb_002481_070 Hb_005545_090--Hb_002481_070 Hb_005545_090--Hb_019952_010 Hb_000523_060 Hb_000523_060 Hb_005545_090--Hb_000523_060 Hb_005545_090--Hb_000507_010 Hb_019952_010--Hb_000507_010 Hb_019952_010--Hb_000933_120 Hb_001998_190 Hb_001998_190 Hb_019952_010--Hb_001998_190 Hb_019952_010--Hb_000976_420 Hb_000507_010--Hb_000933_120 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000976_420 Hb_000933_120--Hb_000976_420 Hb_000933_120--Hb_001998_190 Hb_011671_200--Hb_000976_420 Hb_004725_040 Hb_004725_040 Hb_011671_200--Hb_004725_040 Hb_011671_200--Hb_000933_120 Hb_011671_200--Hb_019952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.420888 0.311105 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0991658 0

CAGE analysis