Hb_005545_090

Information

Type -
Description -
Location Contig5545: 117055-127167
Sequence    

Annotation

kegg
ID dosa:Os01t0694050-00
description Os01g0694050; Hypothetical gene.
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0D9WRL7
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48460: 106132-130249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_090 0.0 - - -
2 Hb_001300_120 0.071091506 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
3 Hb_000856_330 0.0890026778 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
4 Hb_002481_070 0.0997773204 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_019952_010 0.1026379125 - - -
6 Hb_000523_060 0.1091063018 - - -
7 Hb_000507_010 0.1131177755 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
8 Hb_000933_120 0.1224039012 - - hypothetical protein L484_011925 [Morus notabilis]
9 Hb_001021_110 0.1335016204 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
10 Hb_001998_190 0.1337343225 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
11 Hb_000408_010 0.1353336212 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
12 Hb_000976_420 0.1479035266 - - conserved hypothetical protein [Ricinus communis]
13 Hb_175087_010 0.1487132215 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
14 Hb_000878_150 0.1509686151 - - Gibberellin receptor GID1, putative [Ricinus communis]
15 Hb_002787_100 0.1549644834 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
16 Hb_004785_120 0.1570459851 - - Receptor protein kinase 1 [Theobroma cacao]
17 Hb_011671_200 0.1604078644 - - -
18 Hb_168039_020 0.1866269561 - - -
19 Hb_000291_020 0.1892550243 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
20 Hb_000203_030 0.2026094643 - - -

Gene co-expression network

sample Hb_005545_090 Hb_005545_090 Hb_001300_120 Hb_001300_120 Hb_005545_090--Hb_001300_120 Hb_000856_330 Hb_000856_330 Hb_005545_090--Hb_000856_330 Hb_002481_070 Hb_002481_070 Hb_005545_090--Hb_002481_070 Hb_019952_010 Hb_019952_010 Hb_005545_090--Hb_019952_010 Hb_000523_060 Hb_000523_060 Hb_005545_090--Hb_000523_060 Hb_000507_010 Hb_000507_010 Hb_005545_090--Hb_000507_010 Hb_001300_120--Hb_000856_330 Hb_001300_120--Hb_019952_010 Hb_001300_120--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_001300_120--Hb_000933_120 Hb_011671_200 Hb_011671_200 Hb_001300_120--Hb_011671_200 Hb_000856_330--Hb_019952_010 Hb_000856_330--Hb_011671_200 Hb_000976_420 Hb_000976_420 Hb_000856_330--Hb_000976_420 Hb_000856_330--Hb_000507_010 Hb_000856_330--Hb_000933_120 Hb_000408_010 Hb_000408_010 Hb_002481_070--Hb_000408_010 Hb_002481_070--Hb_000523_060 Hb_002787_100 Hb_002787_100 Hb_002481_070--Hb_002787_100 Hb_001998_190 Hb_001998_190 Hb_002481_070--Hb_001998_190 Hb_000291_020 Hb_000291_020 Hb_002481_070--Hb_000291_020 Hb_019952_010--Hb_000507_010 Hb_019952_010--Hb_000933_120 Hb_019952_010--Hb_001998_190 Hb_019952_010--Hb_000976_420 Hb_000523_060--Hb_002787_100 Hb_000523_060--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000523_060--Hb_124207_010 Hb_000878_150 Hb_000878_150 Hb_000523_060--Hb_000878_150 Hb_000507_010--Hb_000933_120 Hb_000507_010--Hb_001998_190 Hb_000507_010--Hb_000976_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0467362 0.0246699 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0118823 0

CAGE analysis