Hb_000878_150

Information

Type -
Description -
Location Contig878: 236386-242453
Sequence    

Annotation

kegg
ID rcu:RCOM_0422870
description Gibberellin receptor GID1, putative
nr
ID XP_002524110.1
description Gibberellin receptor GID1, putative [Ricinus communis]
swissprot
ID Q9FG13
description Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1
trembl
ID B9SDP1
description Gibberellin receptor GID1, putative OS=Ricinus communis GN=RCOM_0422870 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_150 0.0 - - Gibberellin receptor GID1, putative [Ricinus communis]
2 Hb_000523_060 0.1036779266 - - -
3 Hb_002787_100 0.125891614 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
4 Hb_000291_020 0.1428778443 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
5 Hb_124207_010 0.1439818498 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000510_350 0.1456238865 - - Putative polyprotein [Oryza sativa Japonica Group]
7 Hb_002481_070 0.1492750068 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_005545_090 0.1509686151 - - -
9 Hb_051450_010 0.1540853816 - - conserved hypothetical protein [Ricinus communis]
10 Hb_168039_020 0.1568153188 - - -
11 Hb_001021_110 0.1595602054 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
12 Hb_025030_010 0.1731776791 - - -
13 Hb_012553_010 0.1734930443 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
14 Hb_000035_300 0.1922341167 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000890_190 0.1950699503 - - glutaredoxin, grx, putative [Ricinus communis]
16 Hb_175087_010 0.199408493 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
17 Hb_000408_010 0.2043038062 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
18 Hb_004785_120 0.2044517831 - - Receptor protein kinase 1 [Theobroma cacao]
19 Hb_001673_110 0.2048201443 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
20 Hb_001300_120 0.207910017 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000878_150 Hb_000878_150 Hb_000523_060 Hb_000523_060 Hb_000878_150--Hb_000523_060 Hb_002787_100 Hb_002787_100 Hb_000878_150--Hb_002787_100 Hb_000291_020 Hb_000291_020 Hb_000878_150--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000878_150--Hb_124207_010 Hb_000510_350 Hb_000510_350 Hb_000878_150--Hb_000510_350 Hb_002481_070 Hb_002481_070 Hb_000878_150--Hb_002481_070 Hb_000523_060--Hb_002787_100 Hb_000523_060--Hb_002481_070 Hb_000523_060--Hb_000291_020 Hb_000523_060--Hb_124207_010 Hb_005545_090 Hb_005545_090 Hb_000523_060--Hb_005545_090 Hb_002787_100--Hb_000291_020 Hb_002787_100--Hb_124207_010 Hb_002787_100--Hb_002481_070 Hb_012553_010 Hb_012553_010 Hb_002787_100--Hb_012553_010 Hb_000291_020--Hb_124207_010 Hb_000291_020--Hb_012553_010 Hb_166257_010 Hb_166257_010 Hb_000291_020--Hb_166257_010 Hb_000291_020--Hb_002481_070 Hb_124207_010--Hb_012553_010 Hb_124207_010--Hb_166257_010 Hb_001268_070 Hb_001268_070 Hb_124207_010--Hb_001268_070 Hb_000890_190 Hb_000890_190 Hb_000510_350--Hb_000890_190 Hb_168039_020 Hb_168039_020 Hb_000510_350--Hb_168039_020 Hb_003683_090 Hb_003683_090 Hb_000510_350--Hb_003683_090 Hb_000510_350--Hb_012553_010 Hb_000510_350--Hb_124207_010 Hb_025030_010 Hb_025030_010 Hb_000510_350--Hb_025030_010 Hb_000408_010 Hb_000408_010 Hb_002481_070--Hb_000408_010 Hb_002481_070--Hb_005545_090 Hb_001998_190 Hb_001998_190 Hb_002481_070--Hb_001998_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210654 0.699024 0.192767 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.167592 0

CAGE analysis