Hb_012553_010

Information

Type -
Description -
Location Contig12553: 8913-9363
Sequence    

Annotation

kegg
ID vvi:100243613
description polynucleotide 3'-phosphatase ZDP
nr
ID KDP34772.1
description hypothetical protein JCGZ_10552 [Jatropha curcas]
swissprot
ID Q84JE8
description Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP PE=1 SV=1
trembl
ID A0A067KF94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10552 PE=4 SV=1
Gene Ontology
ID GO:0003824
description polynucleotide 3 -phosphatase zdp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012553_010 0.0 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
2 Hb_001268_070 0.0566170834 - - conserved hypothetical protein [Ricinus communis]
3 Hb_124207_010 0.0588218211 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_166257_010 0.0943665823 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
5 Hb_000291_020 0.0951784698 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
6 Hb_000070_140 0.1182545733 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002787_100 0.1201334144 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
8 Hb_000510_350 0.1218305763 - - Putative polyprotein [Oryza sativa Japonica Group]
9 Hb_009297_010 0.1443160044 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_000523_060 0.1465867101 - - -
11 Hb_002648_020 0.1520640752 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
12 Hb_000890_190 0.1539628411 - - glutaredoxin, grx, putative [Ricinus communis]
13 Hb_012268_010 0.1544596413 - - glutamic acid-rich protein [Manihot esculenta]
14 Hb_005588_020 0.1620623999 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
15 Hb_003636_010 0.1638859037 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
16 Hb_001486_130 0.1642341491 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_002294_010 0.1656813143 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
18 Hb_004931_050 0.1694578833 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
19 Hb_000878_150 0.1734930443 - - Gibberellin receptor GID1, putative [Ricinus communis]
20 Hb_006452_140 0.1762761783 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]

Gene co-expression network

sample Hb_012553_010 Hb_012553_010 Hb_001268_070 Hb_001268_070 Hb_012553_010--Hb_001268_070 Hb_124207_010 Hb_124207_010 Hb_012553_010--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_012553_010--Hb_166257_010 Hb_000291_020 Hb_000291_020 Hb_012553_010--Hb_000291_020 Hb_000070_140 Hb_000070_140 Hb_012553_010--Hb_000070_140 Hb_002787_100 Hb_002787_100 Hb_012553_010--Hb_002787_100 Hb_001268_070--Hb_124207_010 Hb_001268_070--Hb_166257_010 Hb_002648_020 Hb_002648_020 Hb_001268_070--Hb_002648_020 Hb_001268_070--Hb_000070_140 Hb_009297_010 Hb_009297_010 Hb_001268_070--Hb_009297_010 Hb_124207_010--Hb_000291_020 Hb_124207_010--Hb_002787_100 Hb_124207_010--Hb_166257_010 Hb_000523_060 Hb_000523_060 Hb_124207_010--Hb_000523_060 Hb_166257_010--Hb_009297_010 Hb_000101_060 Hb_000101_060 Hb_166257_010--Hb_000101_060 Hb_166257_010--Hb_000291_020 Hb_000291_020--Hb_002787_100 Hb_000291_020--Hb_000523_060 Hb_002481_070 Hb_002481_070 Hb_000291_020--Hb_002481_070 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_003636_010 Hb_003636_010 Hb_000070_140--Hb_003636_010 Hb_012268_010 Hb_012268_010 Hb_000070_140--Hb_012268_010 Hb_118777_010 Hb_118777_010 Hb_000070_140--Hb_118777_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020 Hb_002787_100--Hb_000523_060 Hb_002787_100--Hb_002481_070 Hb_000878_150 Hb_000878_150 Hb_002787_100--Hb_000878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.85979 0.395645 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.1189 0

CAGE analysis