Hb_012268_010

Information

Type -
Description -
Location Contig12268: 18753-19389
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAP57707.1
description glutamic acid-rich protein [Manihot esculenta]
swissprot
ID -
description -
trembl
ID Q6XQ13
description Glutamic acid-rich protein OS=Manihot esculenta GN=c54 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06885: 18654-19870
cDNA
(Sanger)
(ID:Location)		 018_A22.ab1: 18655-19359 , 021_D23.ab1: 18904-19682 , 025_J22.ab1: 18654-19529 , 041_N09.ab1: 18904-19322

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012268_010 0.0 - - glutamic acid-rich protein [Manihot esculenta]
2 Hb_000535_030 0.1010437342 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_000070_140 0.1052725613 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_001363_010 0.1075233957 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
5 Hb_003636_010 0.1118759843 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
6 Hb_001810_010 0.1137816909 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
7 Hb_003117_060 0.1212251749 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
8 Hb_005396_100 0.1239417929 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000345_190 0.1271097215 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
10 Hb_003385_090 0.1272305515 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
11 Hb_118777_010 0.1296721256 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_009297_010 0.1303515411 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_032651_060 0.1313090763 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000977_160 0.1348043305 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
15 Hb_001268_070 0.1375899899 - - conserved hypothetical protein [Ricinus communis]
16 Hb_166257_010 0.1435990301 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
17 Hb_005588_020 0.1451087677 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
18 Hb_003376_340 0.1453601823 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001080_040 0.1469272347 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001363_030 0.1496065255 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]

Gene co-expression network

sample Hb_012268_010 Hb_012268_010 Hb_000535_030 Hb_000535_030 Hb_012268_010--Hb_000535_030 Hb_000070_140 Hb_000070_140 Hb_012268_010--Hb_000070_140 Hb_001363_010 Hb_001363_010 Hb_012268_010--Hb_001363_010 Hb_003636_010 Hb_003636_010 Hb_012268_010--Hb_003636_010 Hb_001810_010 Hb_001810_010 Hb_012268_010--Hb_001810_010 Hb_003117_060 Hb_003117_060 Hb_012268_010--Hb_003117_060 Hb_003385_090 Hb_003385_090 Hb_000535_030--Hb_003385_090 Hb_007666_040 Hb_007666_040 Hb_000535_030--Hb_007666_040 Hb_000535_030--Hb_003117_060 Hb_032651_060 Hb_032651_060 Hb_000535_030--Hb_032651_060 Hb_001114_210 Hb_001114_210 Hb_000535_030--Hb_001114_210 Hb_001080_040 Hb_001080_040 Hb_000535_030--Hb_001080_040 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_000070_140--Hb_003636_010 Hb_118777_010 Hb_118777_010 Hb_000070_140--Hb_118777_010 Hb_012553_010 Hb_012553_010 Hb_000070_140--Hb_012553_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020 Hb_005396_100 Hb_005396_100 Hb_001363_010--Hb_005396_100 Hb_000977_160 Hb_000977_160 Hb_001363_010--Hb_000977_160 Hb_001363_010--Hb_000535_030 Hb_001363_010--Hb_003385_090 Hb_001363_010--Hb_032651_060 Hb_003636_010--Hb_118777_010 Hb_003636_010--Hb_003117_060 Hb_000512_080 Hb_000512_080 Hb_003636_010--Hb_000512_080 Hb_106969_010 Hb_106969_010 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_000940_020 Hb_000940_020 Hb_001810_010--Hb_000940_020 Hb_002217_440 Hb_002217_440 Hb_001810_010--Hb_002217_440 Hb_001810_010--Hb_005396_100 Hb_001810_010--Hb_001363_010 Hb_000345_190 Hb_000345_190 Hb_001810_010--Hb_000345_190 Hb_003117_060--Hb_007666_040 Hb_003117_060--Hb_118777_010 Hb_003117_060--Hb_003385_090 Hb_003117_060--Hb_106969_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.723 10108.6 410.986 185.842 65.7042 20.7634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529889 1.76925 1.76599 3895.77 91.6055

CAGE analysis