Hb_106969_010

Information

Type -
Description -
Location Contig106969: 470-4527
Sequence    

Annotation

kegg
ID rcu:RCOM_0841470
description hypothetical protein
nr
ID KHN29433.1
description Cytochrome P450 76C4 [Glycine soja]
swissprot
ID P37122
description Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1
trembl
ID M0ZP07
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001915 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 76a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106969_010 0.0 - - Cytochrome P450 76C4 [Glycine soja]
2 Hb_011909_030 0.09349283 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
3 Hb_001838_010 0.103074873 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
4 Hb_118777_010 0.1067331139 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_000333_130 0.1069303173 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_003117_060 0.1075374631 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
7 Hb_000345_190 0.1075397232 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
8 Hb_003636_010 0.1088618707 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
9 Hb_001953_130 0.1107712588 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
10 Hb_011791_010 0.1125880345 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_000322_200 0.1167123478 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
12 Hb_079955_010 0.1205246238 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
13 Hb_000535_030 0.1245181267 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
14 Hb_046117_050 0.12543005 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
15 Hb_002219_090 0.1272104232 - - protein kinase atmrk1, putative [Ricinus communis]
16 Hb_149056_010 0.132343934 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
17 Hb_001009_110 0.1326686844 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
18 Hb_135811_020 0.1335118254 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
19 Hb_151281_010 0.1344579567 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
20 Hb_000116_390 0.1353632775 - - Mlo protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_106969_010 Hb_106969_010 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_046117_050 Hb_046117_050 Hb_011909_030--Hb_046117_050 Hb_000116_390 Hb_000116_390 Hb_011909_030--Hb_000116_390 Hb_001953_130 Hb_001953_130 Hb_011909_030--Hb_001953_130 Hb_003376_340 Hb_003376_340 Hb_011909_030--Hb_003376_340 Hb_000260_320 Hb_000260_320 Hb_011909_030--Hb_000260_320 Hb_000255_020 Hb_000255_020 Hb_001838_010--Hb_000255_020 Hb_005333_100 Hb_005333_100 Hb_001838_010--Hb_005333_100 Hb_002007_140 Hb_002007_140 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_000976_060 Hb_000976_060 Hb_001838_010--Hb_000976_060 Hb_003636_010 Hb_003636_010 Hb_118777_010--Hb_003636_010 Hb_118777_010--Hb_003117_060 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_001363_030 Hb_001363_030 Hb_118777_010--Hb_001363_030 Hb_000070_140 Hb_000070_140 Hb_118777_010--Hb_000070_140 Hb_011791_010 Hb_011791_010 Hb_000333_130--Hb_011791_010 Hb_149056_010 Hb_149056_010 Hb_000333_130--Hb_149056_010 Hb_001009_110 Hb_001009_110 Hb_000333_130--Hb_001009_110 Hb_001073_060 Hb_001073_060 Hb_000333_130--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000333_130--Hb_002219_090 Hb_007666_040 Hb_007666_040 Hb_003117_060--Hb_007666_040 Hb_003117_060--Hb_003636_010 Hb_000535_030 Hb_000535_030 Hb_003117_060--Hb_000535_030 Hb_003385_090 Hb_003385_090 Hb_003117_060--Hb_003385_090 Hb_000532_060 Hb_000532_060 Hb_000345_190--Hb_000532_060 Hb_000345_190--Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_000345_190--Hb_000170_230 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 45.8056 2.28541 5.11393 0.0412104 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.070535 26.2747 1.09775

CAGE analysis