Hb_000333_130

Information

Type -
Description -
Location Contig333: 109315-111153
Sequence    

Annotation

kegg
ID rcu:RCOM_0711760
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002516271.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9RRA2
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0711760 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase at5g01020-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34938: 109458-110979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_130 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_106969_010 0.1069303173 - - Cytochrome P450 76C4 [Glycine soja]
3 Hb_011791_010 0.109783454 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_149056_010 0.1109394975 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
5 Hb_001009_110 0.1147054823 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
6 Hb_001073_060 0.115326409 - - phosphate transporter 1 [Hevea brasiliensis]
7 Hb_002219_090 0.1163833561 - - protein kinase atmrk1, putative [Ricinus communis]
8 Hb_000345_190 0.1199438938 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
9 Hb_005054_300 0.1226244015 - - aquaporin [Hevea brasiliensis]
10 Hb_079955_010 0.1235572009 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
11 Hb_118777_010 0.1302805182 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_135811_060 0.1400725746 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_001863_100 0.1409122574 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003090_060 0.141378289 - - PAR1 protein [Theobroma cacao]
15 Hb_017417_030 0.1423250833 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
16 Hb_151281_010 0.1429995108 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
17 Hb_000856_240 0.1436720236 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_003636_010 0.1443531754 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
19 Hb_000532_060 0.1458859966 - - copper-transporting atpase p-type, putative [Ricinus communis]
20 Hb_000322_200 0.1474675374 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]

Gene co-expression network

sample Hb_000333_130 Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_000333_130--Hb_106969_010 Hb_011791_010 Hb_011791_010 Hb_000333_130--Hb_011791_010 Hb_149056_010 Hb_149056_010 Hb_000333_130--Hb_149056_010 Hb_001009_110 Hb_001009_110 Hb_000333_130--Hb_001009_110 Hb_001073_060 Hb_001073_060 Hb_000333_130--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000333_130--Hb_002219_090 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_000676_030 Hb_000676_030 Hb_011791_010--Hb_000676_030 Hb_011791_010--Hb_002219_090 Hb_011791_010--Hb_001073_060 Hb_079955_010 Hb_079955_010 Hb_011791_010--Hb_079955_010 Hb_011791_010--Hb_106969_010 Hb_000856_240 Hb_000856_240 Hb_149056_010--Hb_000856_240 Hb_149056_010--Hb_002219_090 Hb_149056_010--Hb_001009_110 Hb_000579_220 Hb_000579_220 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_001009_110--Hb_002219_090 Hb_011214_140 Hb_011214_140 Hb_001009_110--Hb_011214_140 Hb_001009_110--Hb_118777_010 Hb_001009_110--Hb_009778_030 Hb_001073_060--Hb_002219_090 Hb_001073_060--Hb_000856_240 Hb_001073_060--Hb_000676_030 Hb_001073_060--Hb_149056_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_002219_090--Hb_000676_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 74.8247 3.78959 9.88623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.837275 0.658685 0.197529 30.8094 2.19902

CAGE analysis