Hb_001838_010

Information

Type -
Description -
Location Contig1838: 9313-11794
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18380g
description POPTRDRAFT_651093; hypothetical protein
nr
ID XP_002306479.2
description hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
swissprot
ID O22187
description Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=3 SV=1
trembl
ID B9H6I4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18380g PE=3 SV=2
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001838_010 0.0 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
2 Hb_000255_020 0.0916940495 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
3 Hb_005333_100 0.1003297777 - - conserved hypothetical protein [Ricinus communis]
4 Hb_106969_010 0.103074873 - - Cytochrome P450 76C4 [Glycine soja]
5 Hb_002007_140 0.1047247553 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
6 Hb_000265_010 0.1102920667 - - amino acid transporter, putative [Ricinus communis]
7 Hb_000976_060 0.1154208076 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_000045_180 0.1165321895 - - aquaporin PIP1 [Hevea brasiliensis]
9 Hb_005489_160 0.1189734525 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
10 Hb_000856_240 0.1201430441 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_152718_010 0.1241915982 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_011791_010 0.1255490928 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
13 Hb_012395_070 0.1267968509 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
14 Hb_001104_280 0.1281959586 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
15 Hb_012753_200 0.1287571965 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
16 Hb_003938_010 0.1322526047 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
17 Hb_000489_020 0.1323671061 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
18 Hb_001355_110 0.1351839525 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
19 Hb_000030_260 0.1352492075 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
20 Hb_000322_200 0.137157796 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]

Gene co-expression network

sample Hb_001838_010 Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_001838_010--Hb_000255_020 Hb_005333_100 Hb_005333_100 Hb_001838_010--Hb_005333_100 Hb_106969_010 Hb_106969_010 Hb_001838_010--Hb_106969_010 Hb_002007_140 Hb_002007_140 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_000976_060 Hb_000976_060 Hb_001838_010--Hb_000976_060 Hb_000856_240 Hb_000856_240 Hb_000255_020--Hb_000856_240 Hb_003439_020 Hb_003439_020 Hb_000255_020--Hb_003439_020 Hb_134017_010 Hb_134017_010 Hb_000255_020--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_000255_020--Hb_074312_020 Hb_009581_040 Hb_009581_040 Hb_000255_020--Hb_009581_040 Hb_000120_980 Hb_000120_980 Hb_005333_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_005333_100--Hb_000684_010 Hb_005333_100--Hb_000976_060 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_009581_050 Hb_009581_050 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050 Hb_000300_570 Hb_000300_570 Hb_000265_010--Hb_000300_570 Hb_003086_200 Hb_003086_200 Hb_000265_010--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_000265_010--Hb_012053_030 Hb_002007_230 Hb_002007_230 Hb_000265_010--Hb_002007_230 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_001489_030 Hb_001489_030 Hb_000265_010--Hb_001489_030 Hb_152718_010 Hb_152718_010 Hb_000976_060--Hb_152718_010 Hb_001454_160 Hb_001454_160 Hb_000976_060--Hb_001454_160 Hb_005542_110 Hb_005542_110 Hb_000976_060--Hb_005542_110 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201593 21.2864 1.78678 3.81709 0.0168537 0.00857383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0204475 0 0 16.917 1.56802

CAGE analysis