Hb_001623_470

Information

Type -
Description -
Location Contig1623: 359686-361173
Sequence    

Annotation

kegg
ID rcu:RCOM_1024140
description ammonium transporter, putative
nr
ID XP_002518202.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID P54144
description Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1
trembl
ID B9RWT3
description Ammonium transporter OS=Ricinus communis GN=RCOM_1024140 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 1 member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_470 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_001355_110 0.0905009646 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
3 Hb_001769_030 0.0925195032 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
4 Hb_000489_020 0.1041972288 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
5 Hb_005333_100 0.1173501794 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001266_020 0.1192389876 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
7 Hb_000976_060 0.1214413725 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_000221_170 0.124976034 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
9 Hb_012753_200 0.1264368836 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
10 Hb_001709_070 0.1274636232 - - carbohydrate binding protein, putative [Ricinus communis]
11 Hb_001102_270 0.1276319272 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
12 Hb_003878_100 0.1278722436 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
13 Hb_006949_030 0.1363643736 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_000876_050 0.1379265084 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
15 Hb_001331_040 0.1384529359 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
16 Hb_000203_060 0.139546311 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
17 Hb_006938_010 0.1398449281 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_002805_150 0.1403839996 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_001675_130 0.1409131051 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
20 Hb_000085_230 0.1427035161 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_470 Hb_001623_470 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001769_030 Hb_001769_030 Hb_001623_470--Hb_001769_030 Hb_000489_020 Hb_000489_020 Hb_001623_470--Hb_000489_020 Hb_005333_100 Hb_005333_100 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060 Hb_001355_110--Hb_001266_020 Hb_001621_020 Hb_001621_020 Hb_001355_110--Hb_001621_020 Hb_001102_270 Hb_001102_270 Hb_001355_110--Hb_001102_270 Hb_012753_200 Hb_012753_200 Hb_001355_110--Hb_012753_200 Hb_001355_110--Hb_000489_020 Hb_001769_030--Hb_000489_020 Hb_152718_010 Hb_152718_010 Hb_001769_030--Hb_152718_010 Hb_001769_030--Hb_005333_100 Hb_001769_030--Hb_001355_110 Hb_000203_060 Hb_000203_060 Hb_001769_030--Hb_000203_060 Hb_000265_020 Hb_000265_020 Hb_000489_020--Hb_000265_020 Hb_000489_020--Hb_005333_100 Hb_000489_020--Hb_152718_010 Hb_000120_980 Hb_000120_980 Hb_005333_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_005333_100--Hb_000684_010 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_001266_020--Hb_012753_200 Hb_002805_150 Hb_002805_150 Hb_001266_020--Hb_002805_150 Hb_006949_030 Hb_006949_030 Hb_001266_020--Hb_006949_030 Hb_001266_020--Hb_001621_020 Hb_000976_060--Hb_152718_010 Hb_001454_160 Hb_001454_160 Hb_000976_060--Hb_001454_160 Hb_005542_110 Hb_005542_110 Hb_000976_060--Hb_005542_110 Hb_000976_060--Hb_001838_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 21.8169 4.98615 2.44777 0 0.0138811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0630386 0.0743909 0.0465741 25.0842 4.97847

CAGE analysis