Hb_000489_020

Information

Type -
Description -
Location Contig489: 21336-24206
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_011013756.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID A0A067KDP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13530 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45166: 24020-24137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000489_020 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
2 Hb_000265_020 0.081672672 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
3 Hb_001355_110 0.1011267398 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
4 Hb_005333_100 0.1030305577 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001623_470 0.1041972288 - - ammonium transporter, putative [Ricinus communis]
6 Hb_152718_010 0.1059052468 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
7 Hb_001769_030 0.1098087546 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_000255_020 0.1102678084 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
9 Hb_033045_010 0.1166073925 - - copine, putative [Ricinus communis]
10 Hb_001102_270 0.1167124542 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
11 Hb_007765_140 0.1169456743 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
12 Hb_001894_040 0.1174060789 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
13 Hb_075449_040 0.1181483046 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
14 Hb_107543_010 0.1216598322 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
15 Hb_000976_060 0.1248679413 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_000359_280 0.1317402401 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
17 Hb_001838_010 0.1323671061 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
18 Hb_046101_010 0.1366902172 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
19 Hb_000684_010 0.1372977462 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000120_070 0.1385517267 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]

Gene co-expression network

sample Hb_000489_020 Hb_000489_020 Hb_000265_020 Hb_000265_020 Hb_000489_020--Hb_000265_020 Hb_001355_110 Hb_001355_110 Hb_000489_020--Hb_001355_110 Hb_005333_100 Hb_005333_100 Hb_000489_020--Hb_005333_100 Hb_001623_470 Hb_001623_470 Hb_000489_020--Hb_001623_470 Hb_152718_010 Hb_152718_010 Hb_000489_020--Hb_152718_010 Hb_001769_030 Hb_001769_030 Hb_000489_020--Hb_001769_030 Hb_033045_010 Hb_033045_010 Hb_000265_020--Hb_033045_010 Hb_002085_070 Hb_002085_070 Hb_000265_020--Hb_002085_070 Hb_006970_150 Hb_006970_150 Hb_000265_020--Hb_006970_150 Hb_000521_290 Hb_000521_290 Hb_000265_020--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000265_020--Hb_012018_020 Hb_001266_020 Hb_001266_020 Hb_001355_110--Hb_001266_020 Hb_001355_110--Hb_001623_470 Hb_001621_020 Hb_001621_020 Hb_001355_110--Hb_001621_020 Hb_001102_270 Hb_001102_270 Hb_001355_110--Hb_001102_270 Hb_012753_200 Hb_012753_200 Hb_001355_110--Hb_012753_200 Hb_000120_980 Hb_000120_980 Hb_005333_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_005333_100--Hb_000684_010 Hb_000976_060 Hb_000976_060 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_001623_470--Hb_001769_030 Hb_001623_470--Hb_005333_100 Hb_001623_470--Hb_001266_020 Hb_001623_470--Hb_000976_060 Hb_118777_010 Hb_118777_010 Hb_152718_010--Hb_118777_010 Hb_152718_010--Hb_005333_100 Hb_152718_010--Hb_000976_060 Hb_152718_010--Hb_000265_020 Hb_152718_010--Hb_001769_030 Hb_001769_030--Hb_005333_100 Hb_001769_030--Hb_001355_110 Hb_000203_060 Hb_000203_060 Hb_001769_030--Hb_000203_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.60583 1.48875 1.03519 0 0.0094099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.99139 1.13535

CAGE analysis