Hb_000976_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig976: 89733-91774
Sequence    

Annotation

kegg
ID rcu:RCOM_1575740
description NAC domain-containing protein, putative
nr
ID XP_002513398.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SK55
description Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1
trembl
ID B9RI29
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_1575740 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor jungbrunnen 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_060 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_005333_100 0.0874245007 - - conserved hypothetical protein [Ricinus communis]
3 Hb_152718_010 0.1071541169 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
4 Hb_001454_160 0.1080615444 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
5 Hb_005542_110 0.11038611 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
6 Hb_001838_010 0.1154208076 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
7 Hb_001623_470 0.1214413725 - - ammonium transporter, putative [Ricinus communis]
8 Hb_000489_020 0.1248679413 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
9 Hb_002555_020 0.1258574296 - - Receptor-like protein kinase [Medicago truncatula]
10 Hb_000221_170 0.1343549978 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
11 Hb_000120_980 0.1349774214 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
12 Hb_000684_010 0.1371418169 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002475_100 0.1379666386 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
14 Hb_005489_160 0.1387086765 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
15 Hb_000255_020 0.1407806969 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
16 Hb_001355_110 0.1428060056 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
17 Hb_000876_050 0.1438303971 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
18 Hb_001769_030 0.1443495125 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_001489_030 0.1453044173 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
20 Hb_018563_040 0.1469290686 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000976_060 Hb_000976_060 Hb_005333_100 Hb_005333_100 Hb_000976_060--Hb_005333_100 Hb_152718_010 Hb_152718_010 Hb_000976_060--Hb_152718_010 Hb_001454_160 Hb_001454_160 Hb_000976_060--Hb_001454_160 Hb_005542_110 Hb_005542_110 Hb_000976_060--Hb_005542_110 Hb_001838_010 Hb_001838_010 Hb_000976_060--Hb_001838_010 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470 Hb_000120_980 Hb_000120_980 Hb_005333_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_005333_100--Hb_000684_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_118777_010 Hb_118777_010 Hb_152718_010--Hb_118777_010 Hb_152718_010--Hb_005333_100 Hb_152718_010--Hb_000489_020 Hb_000265_020 Hb_000265_020 Hb_152718_010--Hb_000265_020 Hb_001769_030 Hb_001769_030 Hb_152718_010--Hb_001769_030 Hb_002555_020 Hb_002555_020 Hb_001454_160--Hb_002555_020 Hb_018563_040 Hb_018563_040 Hb_001454_160--Hb_018563_040 Hb_001454_160--Hb_005542_110 Hb_001454_160--Hb_152718_010 Hb_001489_030 Hb_001489_030 Hb_001454_160--Hb_001489_030 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_001838_010--Hb_000255_020 Hb_106969_010 Hb_106969_010 Hb_001838_010--Hb_106969_010 Hb_002007_140 Hb_002007_140 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001623_470--Hb_001769_030 Hb_001623_470--Hb_000489_020 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.39806 0.419555 0.468408 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.08106 0.0318816 0 3.35883 0.659837

CAGE analysis