Hb_002555_020

Information

Type -
Description -
Location Contig2555: 12245-33330
Sequence    

Annotation

kegg
ID mtr:MTR_4g018970
description Receptor-like protein kinase
nr
ID XP_003604806.1
description Receptor-like protein kinase [Medicago truncatula]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID G7JR90
description Leucine-rich receptor-like kinase family protein OS=Medicago truncatula GN=MTR_4g018970 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002555_020 0.0 - - Receptor-like protein kinase [Medicago truncatula]
2 Hb_001454_160 0.0788915379 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
3 Hb_018563_040 0.1122592762 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_004195_190 0.1191726496 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000976_060 0.1258574296 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_001489_030 0.1274159901 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
7 Hb_005542_110 0.1398762013 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
8 Hb_007666_040 0.1410606771 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
9 Hb_017987_040 0.144514073 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
10 Hb_005489_160 0.1484361796 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
11 Hb_169388_010 0.1504427523 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_151364_010 0.150492295 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_005000_220 0.1528188534 - - gulonolactone oxidase, putative [Ricinus communis]
14 Hb_001864_010 0.1562551732 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000221_170 0.1570487213 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
16 Hb_008503_020 0.1578165228 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_003117_060 0.1596514691 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
18 Hb_152718_010 0.1610564944 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000679_240 0.1630886232 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
20 Hb_004619_010 0.1632646962 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_002555_020 Hb_002555_020 Hb_001454_160 Hb_001454_160 Hb_002555_020--Hb_001454_160 Hb_018563_040 Hb_018563_040 Hb_002555_020--Hb_018563_040 Hb_004195_190 Hb_004195_190 Hb_002555_020--Hb_004195_190 Hb_000976_060 Hb_000976_060 Hb_002555_020--Hb_000976_060 Hb_001489_030 Hb_001489_030 Hb_002555_020--Hb_001489_030 Hb_005542_110 Hb_005542_110 Hb_002555_020--Hb_005542_110 Hb_001454_160--Hb_018563_040 Hb_001454_160--Hb_000976_060 Hb_001454_160--Hb_005542_110 Hb_152718_010 Hb_152718_010 Hb_001454_160--Hb_152718_010 Hb_001454_160--Hb_001489_030 Hb_169388_010 Hb_169388_010 Hb_018563_040--Hb_169388_010 Hb_151364_010 Hb_151364_010 Hb_018563_040--Hb_151364_010 Hb_003385_090 Hb_003385_090 Hb_018563_040--Hb_003385_090 Hb_003117_060 Hb_003117_060 Hb_018563_040--Hb_003117_060 Hb_004195_190--Hb_001454_160 Hb_000521_300 Hb_000521_300 Hb_004195_190--Hb_000521_300 Hb_004195_190--Hb_001489_030 Hb_004619_010 Hb_004619_010 Hb_004195_190--Hb_004619_010 Hb_000679_240 Hb_000679_240 Hb_004195_190--Hb_000679_240 Hb_005333_100 Hb_005333_100 Hb_000976_060--Hb_005333_100 Hb_000976_060--Hb_152718_010 Hb_000976_060--Hb_005542_110 Hb_001838_010 Hb_001838_010 Hb_000976_060--Hb_001838_010 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_000684_010 Hb_000684_010 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0029723 0.376832 0.0110849 0.0144814 0 0.00266207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00672553 0.00529311 0 0.284676 0.0455949

CAGE analysis