Hb_000679_240

Information

Type -
Description -
Location Contig679: 163983-166424
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27070g
description POPTRDRAFT_561902; hypothetical protein
nr
ID XP_012076558.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067KMS7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_07161 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_240 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
2 Hb_067034_030 0.1561282117 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_000589_180 0.1601353902 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
4 Hb_000521_300 0.1611696537 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_002555_020 0.1630886232 - - Receptor-like protein kinase [Medicago truncatula]
6 Hb_004195_190 0.1648223585 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000086_370 0.166744337 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
8 Hb_000976_060 0.1677822037 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_005542_110 0.1757565159 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
10 Hb_002475_100 0.178373081 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
11 Hb_011214_140 0.1788933232 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_004218_160 0.1789360633 - - NBS-LRR type disease resistance protein [Medicago truncatula]
13 Hb_000657_030 0.1844082452 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_006501_170 0.1870969424 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
15 Hb_003106_210 0.18946121 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
16 Hb_000343_260 0.189478371 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
17 Hb_007618_010 0.1910793666 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
18 Hb_007709_010 0.1919803667 - - -
19 Hb_001454_160 0.1921653941 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
20 Hb_000684_010 0.1994021729 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_240 Hb_000679_240 Hb_067034_030 Hb_067034_030 Hb_000679_240--Hb_067034_030 Hb_000589_180 Hb_000589_180 Hb_000679_240--Hb_000589_180 Hb_000521_300 Hb_000521_300 Hb_000679_240--Hb_000521_300 Hb_002555_020 Hb_002555_020 Hb_000679_240--Hb_002555_020 Hb_004195_190 Hb_004195_190 Hb_000679_240--Hb_004195_190 Hb_000086_370 Hb_000086_370 Hb_000679_240--Hb_000086_370 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_006501_170 Hb_006501_170 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_067034_030--Hb_000521_300 Hb_003430_020 Hb_003430_020 Hb_000589_180--Hb_003430_020 Hb_002007_140 Hb_002007_140 Hb_000589_180--Hb_002007_140 Hb_000589_180--Hb_000086_370 Hb_009581_050 Hb_009581_050 Hb_000589_180--Hb_009581_050 Hb_002475_100 Hb_002475_100 Hb_000589_180--Hb_002475_100 Hb_000000_060 Hb_000000_060 Hb_000589_180--Hb_000000_060 Hb_001252_040 Hb_001252_040 Hb_000521_300--Hb_001252_040 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_001373_010 Hb_001373_010 Hb_000521_300--Hb_001373_010 Hb_011214_140 Hb_011214_140 Hb_000521_300--Hb_011214_140 Hb_000521_300--Hb_004195_190 Hb_001454_160 Hb_001454_160 Hb_002555_020--Hb_001454_160 Hb_018563_040 Hb_018563_040 Hb_002555_020--Hb_018563_040 Hb_002555_020--Hb_004195_190 Hb_000976_060 Hb_000976_060 Hb_002555_020--Hb_000976_060 Hb_001489_030 Hb_001489_030 Hb_002555_020--Hb_001489_030 Hb_005542_110 Hb_005542_110 Hb_002555_020--Hb_005542_110 Hb_004195_190--Hb_001454_160 Hb_004195_190--Hb_001489_030 Hb_004619_010 Hb_004619_010 Hb_004195_190--Hb_004619_010 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_012807_060 Hb_012807_060 Hb_000086_370--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0239547 1.14446 0.0433115 0.190048 0 0.043515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0906245 0.0285243 0 0.83835 0.212096

CAGE analysis