Hb_011214_140

Information

Type -
Description -
Location Contig11214: 109475-116778
Sequence    

Annotation

kegg
ID rcu:RCOM_1603590
description Ran GTPase binding protein, putative
nr
ID XP_002526580.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SKR1
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_1603590 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase herc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_140 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_001009_110 0.112535208 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
3 Hb_000030_260 0.142610162 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_000343_260 0.1477836582 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_000521_300 0.1479849692 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
6 Hb_000086_370 0.1483364329 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
7 Hb_006501_170 0.1490086262 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
8 Hb_152718_010 0.1501954652 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
9 Hb_005333_100 0.1511076442 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001454_160 0.1512617061 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
11 Hb_005542_110 0.1529225614 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
12 Hb_000976_060 0.1530641833 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_000668_160 0.1586562486 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
14 Hb_011791_010 0.1586791699 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
15 Hb_001838_010 0.1598711683 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
16 Hb_005736_070 0.1604067417 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
17 Hb_008948_080 0.1615478271 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
18 Hb_009581_040 0.1621177332 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
19 Hb_000120_980 0.1624659627 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
20 Hb_118777_010 0.1644127742 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011214_140 Hb_011214_140 Hb_001009_110 Hb_001009_110 Hb_011214_140--Hb_001009_110 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370 Hb_006501_170 Hb_006501_170 Hb_011214_140--Hb_006501_170 Hb_002219_090 Hb_002219_090 Hb_001009_110--Hb_002219_090 Hb_149056_010 Hb_149056_010 Hb_001009_110--Hb_149056_010 Hb_000333_130 Hb_000333_130 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_009778_030 Hb_009778_030 Hb_001009_110--Hb_009778_030 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_010578_050 Hb_010578_050 Hb_000030_260--Hb_010578_050 Hb_002783_320 Hb_002783_320 Hb_000030_260--Hb_002783_320 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_002783_300 Hb_002783_300 Hb_000343_260--Hb_002783_300 Hb_000521_290 Hb_000521_290 Hb_000343_260--Hb_000521_290 Hb_007709_010 Hb_007709_010 Hb_000343_260--Hb_007709_010 Hb_000668_160 Hb_000668_160 Hb_000343_260--Hb_000668_160 Hb_152718_010 Hb_152718_010 Hb_000343_260--Hb_152718_010 Hb_107543_010 Hb_107543_010 Hb_000343_260--Hb_107543_010 Hb_001252_040 Hb_001252_040 Hb_000521_300--Hb_001252_040 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_001373_010 Hb_001373_010 Hb_000521_300--Hb_001373_010 Hb_004195_190 Hb_004195_190 Hb_000521_300--Hb_004195_190 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_000086_370--Hb_000589_180 Hb_012807_060 Hb_012807_060 Hb_000086_370--Hb_012807_060 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00560501 0.614409 0.0462596 0.0886907 0 0.010048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00999713 0.0191613 0.36058 0.0855025

CAGE analysis