Hb_000343_260

Information

Type -
Description -
Location Contig343: 222252-224678
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24080g
description POPTRDRAFT_838390; kinase family protein
nr
ID XP_012064945.1
description PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
swissprot
ID Q9LX66
description Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1
trembl
ID A0A067LIT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05631 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35858: 222835-223276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_260 0.0 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
2 Hb_002783_300 0.0851006652 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000521_290 0.1223482287 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
4 Hb_007709_010 0.1285882778 - - -
5 Hb_000668_160 0.1286557846 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
6 Hb_152718_010 0.1302131024 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
7 Hb_107543_010 0.1382725797 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
8 Hb_002518_270 0.1383679275 - - glycogen phosphorylase, putative [Ricinus communis]
9 Hb_000579_220 0.1397764667 - - transcription factor, putative [Ricinus communis]
10 Hb_000280_110 0.1408657559 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_009581_040 0.1462887979 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
12 Hb_011214_140 0.1477836582 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_000819_010 0.1477930642 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
14 Hb_000489_020 0.1482831319 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
15 Hb_002219_090 0.1506716331 - - protein kinase atmrk1, putative [Ricinus communis]
16 Hb_005542_110 0.1538816398 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
17 Hb_009778_030 0.155035672 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
18 Hb_001009_110 0.1574336042 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
19 Hb_000976_060 0.1575410338 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_020648_020 0.1578915971 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000343_260 Hb_000343_260 Hb_002783_300 Hb_002783_300 Hb_000343_260--Hb_002783_300 Hb_000521_290 Hb_000521_290 Hb_000343_260--Hb_000521_290 Hb_007709_010 Hb_007709_010 Hb_000343_260--Hb_007709_010 Hb_000668_160 Hb_000668_160 Hb_000343_260--Hb_000668_160 Hb_152718_010 Hb_152718_010 Hb_000343_260--Hb_152718_010 Hb_107543_010 Hb_107543_010 Hb_000343_260--Hb_107543_010 Hb_000579_220 Hb_000579_220 Hb_002783_300--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_002783_300--Hb_009778_030 Hb_000172_010 Hb_000172_010 Hb_002783_300--Hb_000172_010 Hb_000146_110 Hb_000146_110 Hb_002783_300--Hb_000146_110 Hb_002783_300--Hb_000521_290 Hb_002085_070 Hb_002085_070 Hb_000521_290--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_000521_290--Hb_000002_100 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_010921_060 Hb_010921_060 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_001514_100 Hb_001514_100 Hb_000521_290--Hb_001514_100 Hb_011174_100 Hb_011174_100 Hb_007709_010--Hb_011174_100 Hb_000684_010 Hb_000684_010 Hb_007709_010--Hb_000684_010 Hb_005542_110 Hb_005542_110 Hb_007709_010--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_007709_010--Hb_000086_370 Hb_000876_050 Hb_000876_050 Hb_007709_010--Hb_000876_050 Hb_000819_010 Hb_000819_010 Hb_000668_160--Hb_000819_010 Hb_000280_110 Hb_000280_110 Hb_000668_160--Hb_000280_110 Hb_000668_160--Hb_010921_060 Hb_009803_030 Hb_009803_030 Hb_000668_160--Hb_009803_030 Hb_002600_010 Hb_002600_010 Hb_000668_160--Hb_002600_010 Hb_000668_160--Hb_107543_010 Hb_118777_010 Hb_118777_010 Hb_152718_010--Hb_118777_010 Hb_005333_100 Hb_005333_100 Hb_152718_010--Hb_005333_100 Hb_000489_020 Hb_000489_020 Hb_152718_010--Hb_000489_020 Hb_000976_060 Hb_000976_060 Hb_152718_010--Hb_000976_060 Hb_000265_020 Hb_000265_020 Hb_152718_010--Hb_000265_020 Hb_001769_030 Hb_001769_030 Hb_152718_010--Hb_001769_030 Hb_107543_010--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_107543_010--Hb_046101_010 Hb_001894_040 Hb_001894_040 Hb_107543_010--Hb_001894_040 Hb_107543_010--Hb_009803_030 Hb_107543_010--Hb_000489_020 Hb_074312_020 Hb_074312_020 Hb_107543_010--Hb_074312_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.073894 2.41445 0.294182 0.311219 0 0.0227367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0182468 0 0 1.12347 0.426984

CAGE analysis