Hb_001514_100

Information

Type -
Description -
Location Contig1514: 117636-118190
Sequence    

Annotation

kegg
ID rcu:RCOM_1588720
description F-box protein GID2, putative
nr
ID XP_012068276.1
description PREDICTED: F-box protein GID2 [Jatropha curcas]
swissprot
ID Q9STX3
description F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1
trembl
ID A0A067KZR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16079 PE=4 SV=1
Gene Ontology
ID GO:0007165
description f-box protein gid2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_100 0.0 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
2 Hb_002085_070 0.0736741692 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_002294_010 0.0973154132 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_012018_020 0.1087141607 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
5 Hb_000002_100 0.1094239213 - - phosphate transporter [Manihot esculenta]
6 Hb_000521_290 0.113103214 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
7 Hb_004230_060 0.1157289353 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
8 Hb_000417_030 0.1168324703 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
9 Hb_000265_020 0.1271266675 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
10 Hb_157980_010 0.1280250503 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000512_080 0.128496677 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_000395_030 0.1370437669 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_152718_010 0.1384317615 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
14 Hb_005054_300 0.1399085657 - - aquaporin [Hevea brasiliensis]
15 Hb_021596_070 0.1416180831 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_118777_010 0.1432742802 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_111985_060 0.1446393816 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
18 Hb_000070_140 0.1454865945 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_003636_010 0.1456421685 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
20 Hb_010962_030 0.1513644761 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001514_100 Hb_001514_100 Hb_002085_070 Hb_002085_070 Hb_001514_100--Hb_002085_070 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_012018_020 Hb_012018_020 Hb_001514_100--Hb_012018_020 Hb_000002_100 Hb_000002_100 Hb_001514_100--Hb_000002_100 Hb_000521_290 Hb_000521_290 Hb_001514_100--Hb_000521_290 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_000070_140 Hb_000070_140 Hb_002294_010--Hb_000070_140 Hb_000417_030 Hb_000417_030 Hb_002294_010--Hb_000417_030 Hb_118777_010 Hb_118777_010 Hb_002294_010--Hb_118777_010 Hb_001363_030 Hb_001363_030 Hb_002294_010--Hb_001363_030 Hb_000003_620 Hb_000003_620 Hb_002294_010--Hb_000003_620 Hb_012018_020--Hb_000002_100 Hb_012018_020--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_012018_020--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_012018_020--Hb_033045_010 Hb_000002_100--Hb_000521_290 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_004230_060--Hb_002085_070 Hb_004230_060--Hb_000417_030 Hb_008616_060 Hb_008616_060 Hb_004230_060--Hb_008616_060 Hb_000223_050 Hb_000223_050 Hb_004230_060--Hb_000223_050 Hb_010962_030 Hb_010962_030 Hb_004230_060--Hb_010962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33274 197.639 39.5594 9.09285 0.47169 0.218001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0 0.154276 66.6277 13.9831

CAGE analysis