Hb_000417_030

Information

Type transcription factor
Description TF Family: G2-like
Location Contig417: 15540-21186
Sequence    

Annotation

kegg
ID tcc:TCM_029684
description Myb-like HTH transcriptional regulator family protein, putative
nr
ID XP_012092425.1
description PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID A0A067JEB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21574 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-like transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_030 0.0 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
2 Hb_001514_100 0.1168324703 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
3 Hb_002294_010 0.1325169779 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_012018_020 0.1424101024 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
5 Hb_004230_060 0.1460672465 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
6 Hb_000002_100 0.1481908029 - - phosphate transporter [Manihot esculenta]
7 Hb_010962_030 0.1530764543 - - kinase, putative [Ricinus communis]
8 Hb_000521_290 0.1570118352 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
9 Hb_108055_010 0.1573542856 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_002085_070 0.1584947308 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000395_030 0.1594156119 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_007371_020 0.1654063387 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
13 Hb_129399_010 0.1659345857 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002518_270 0.1686198712 - - glycogen phosphorylase, putative [Ricinus communis]
15 Hb_000343_260 0.1742635786 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
16 Hb_000003_620 0.1758862552 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
17 Hb_000265_020 0.1763839077 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
18 Hb_152718_010 0.178570196 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000333_120 0.1821397428 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
20 Hb_001363_030 0.1826715962 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]

Gene co-expression network

sample Hb_000417_030 Hb_000417_030 Hb_001514_100 Hb_001514_100 Hb_000417_030--Hb_001514_100 Hb_002294_010 Hb_002294_010 Hb_000417_030--Hb_002294_010 Hb_012018_020 Hb_012018_020 Hb_000417_030--Hb_012018_020 Hb_004230_060 Hb_004230_060 Hb_000417_030--Hb_004230_060 Hb_000002_100 Hb_000002_100 Hb_000417_030--Hb_000002_100 Hb_010962_030 Hb_010962_030 Hb_000417_030--Hb_010962_030 Hb_002085_070 Hb_002085_070 Hb_001514_100--Hb_002085_070 Hb_001514_100--Hb_002294_010 Hb_001514_100--Hb_012018_020 Hb_001514_100--Hb_000002_100 Hb_000521_290 Hb_000521_290 Hb_001514_100--Hb_000521_290 Hb_001514_100--Hb_004230_060 Hb_000070_140 Hb_000070_140 Hb_002294_010--Hb_000070_140 Hb_118777_010 Hb_118777_010 Hb_002294_010--Hb_118777_010 Hb_001363_030 Hb_001363_030 Hb_002294_010--Hb_001363_030 Hb_000003_620 Hb_000003_620 Hb_002294_010--Hb_000003_620 Hb_012018_020--Hb_002085_070 Hb_012018_020--Hb_000002_100 Hb_000265_020 Hb_000265_020 Hb_012018_020--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_012018_020--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_012018_020--Hb_033045_010 Hb_004230_060--Hb_002085_070 Hb_008616_060 Hb_008616_060 Hb_004230_060--Hb_008616_060 Hb_000223_050 Hb_000223_050 Hb_004230_060--Hb_000223_050 Hb_004230_060--Hb_010962_030 Hb_000002_100--Hb_002085_070 Hb_000002_100--Hb_000521_290 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_007371_020 Hb_007371_020 Hb_010962_030--Hb_007371_020 Hb_021596_070 Hb_021596_070 Hb_010962_030--Hb_021596_070 Hb_000146_110 Hb_000146_110 Hb_010962_030--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_010962_030--Hb_041290_030 Hb_010962_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010962_030--Hb_009778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051758 3.28104 0.623079 0.0664053 0.0161632 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0393921 0 0 0.992597 0.449515

CAGE analysis